| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 2633288 | 47 (0.910) | 8 (0.170) | 3/92 | NT | 15.6% | coding (306/768 nt) | livG | leucine/isoleucine/valine transporter subunit |
| ? | minE | = 2633300 | 44 (0.940) | coding (318/768 nt) | livG | leucine/isoleucine/valine transporter subunit | |||||
GCATGGGCGTGGTGCGCACCTTCCAGCATGTGCGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCTGGTGGCGCAGCATCAGCAACTGAAAACCGGGCTGTTCTCTGGCCTGTTGAAAACGCCATCCTTCCGTC > minE/2633218‑2633355 | gCATGGGCGTGGTGCGCACCTTCCAGCATGTGCGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCTG > 1:3692570‑M1/1‑71 (MQ=255)gCATGGGCGTGGTGCGCACCTTCCAGCATGTGCGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCTG > 1:3819113‑M1/1‑71 (MQ=255) aTGGGCGTGGTGCGCACCTTCCAGCATGTGCGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCtggt < 1:3759674/71‑1 (MQ=255) aTGGGCGTGGTGCGCACCTTCCAGCATGTGCGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCtggt > 1:3654486/1‑71 (MQ=255) ggCGTGGTGCGCACCTTCCAGCATGTGCGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCTGGTGgc > 1:755326/1‑71 (MQ=255) gCGTGGTGCGCACCTTCCAGCATGTGCGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCTGGTGgcg < 1:2523897/71‑1 (MQ=255) gCGTGGTGCGCACCTTCCAGCATGTGCGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCTGGTGgcg > 1:1826050/1‑71 (MQ=255) gtggtgCGCACCTTCCAGCATGTGCGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCTGGTGGCgca < 1:97521/71‑1 (MQ=255) tggtgCGCACCTTCCAGCATGTGCGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCTGGTGGCgca < 1:1306230/70‑1 (MQ=255) ggtgCGCACCTTCCAGCATGTGCGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCTGGTGGCgcag > 1:3219683/1‑70 (MQ=255) ggtgCGCACCTTCCAGCATGTGCGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCTGGTGGCgcag > 1:1549452/1‑70 (MQ=255) gtgCGCACCTTCCAGCATGTGCGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCTGGTGGCgcagca < 1:3478599/71‑1 (MQ=255) cgcACCTTCCAGCATGTGCGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCTGGTGGCGCAGCAt > 1:1515332/1‑69 (MQ=255) cACCTTCCAGCATGTGCGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCTGGTGGCGCAGCAt < 1:2132126/67‑1 (MQ=255) cACCTTCCAGCATGTGCGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCTGGTGGCGCAGCAt < 1:3807014/67‑1 (MQ=255) aCCTTCCAGCATGTGCGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCTGGTGGCGCAGCATcagca > 1:3758355‑M2/1‑66 (MQ=255) aCCTTCCAGCATGTGCGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCTGGTGGCGCAGCATcagc < 1:3427720‑M2/70‑5 (MQ=255) ccTTCCAGCATGTGCGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCTGGTGGCGCAGCATCAGCaa < 1:1482144/71‑1 (MQ=255) cTTCCAGCATGTGCGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCTGatgctgcgcgaccagcagg > 1:1754162‑M1/1‑52 (MQ=255) cTTCCAGCATGTGCGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCTGatgctgcgccaccagcagg > 1:3141057‑M1/1‑52 (MQ=255) cTTCCAGCATGTGCGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCTGatgctgcgccaccagcagg > 1:2915875‑M1/1‑52 (MQ=255) cTTCCAGCATGTGCGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCTGatgctgcgcaaccagcagg > 1:1758699‑M1/1‑52 (MQ=255) cTTCCAGCATGTGCGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCTGGTGgcg < 1:630321/58‑1 (MQ=255) ttCCAGCATGTGCGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCTGGTGGCGCAGCAt > 1:267620/1‑63 (MQ=255) tCCAGCATGTGCGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCTGGTGGCGCAGCATCAGCAACt > 1:2038852/1‑70 (MQ=255) cAGCATGTGCGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCTGatgctgcgccacca < 1:1091010‑M1/62‑15 (MQ=255) cAGCATGTGCGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCTGGTGGCGCAGCATCAGCAACTGaa < 1:2159847/71‑1 (MQ=255) cAGCATGTGCGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCTGGTGGCGCAGCATCAGCAACTGaa < 1:2212376/71‑1 (MQ=255) aGCATGTGCGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCTGGTGGCGCAGCATCAGCAACTGaaa < 1:3740806/71‑1 (MQ=255) aGCATGTGCGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCTGGTGGCGCAGCATCAGCAACTGaaa < 1:3944513/71‑1 (MQ=255) cATGTGCGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCTGGTGGCGCAGCATCAGCAACTGAAAAc > 1:1619845/1‑71 (MQ=255) tgtgCTTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCTGGTGGCGCAGCATCAGCAACTGAAAACCg < 1:2192659/71‑1 (MQ=255) tgtgCGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCTGGTGGCGCAGCATCAGCAACTGAAAACCg < 1:1200279/71‑1 (MQ=255) tgtgCGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCTGGTGGCGCAGCATCAGCAACTGAAAACCg < 1:1113577/71‑1 (MQ=255) tgCGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCTGGTGGCGCAGCATCAGCAACTGAAAACCggg > 1:1800133/1‑71 (MQ=255) tgCGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCTGGTGGCGCAGCATCAGCAACTGAAAACCggg > 1:2866158/1‑71 (MQ=255) cGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCTGGTGGCGCAGCATc > 1:1020321‑M2/1‑51 (MQ=255) gTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCtggt < 1:989332/40‑1 (MQ=255) tGTTCCGTGAAATGACGGTAATTGAAAACCTGCTGGTGgc > 1:3161381/1‑40 (MQ=255) tGTTCCGTGAAATGACGGTAATTGAAAACCTGCTGGTGgc > 1:476558/1‑40 (MQ=255) ccGTGAAATGACGGTAATTGAAAACCTGCTGatgctgcgccac > 1:376089‑M1/1‑31 (MQ=255) ccGTGAAATGACGGTAATTGAAAACCTGCTGatgctgcgccac > 1:3679140‑M1/1‑31 (MQ=255) ccGTGAAATGACGGTAATTGAAAACCTGCTGatgctgcgccac > 1:3674782‑M1/1‑31 (MQ=255) ccGTGAAATGACGGTAATTGAAAACCTGCTGGTGGCGCAGCATCAGCAACTGAAAACCGGGCTGTTCTCTg > 1:2620270/1‑71 (MQ=255) cGTGAAATGACGGTAATTGAAAACCTGCTGGTGGCGCAGCATCAGCAACTGAAAACCGGGCTGTTCTCTg < 1:2456437/70‑1 (MQ=255) gTGAAATGACGGTAATTGAAAACCTGCTGGTGGCgcag < 1:905005/38‑1 (MQ=255) aaaTGACGGTAATTGAAAACCTGCTGGTGGCgcagca < 1:502557/37‑1 (MQ=255) aaaTGACGGTAATTGAAAACCTGCTGGTGGCGCAGCATCAGCAACTGAAAACCGGGCTGTTCTCTGGCCTg < 1:1277752/71‑1 (MQ=255) aaTGACGGTAATTGAAAACCTGCTGGTGGCGCAGCATCAGCAACTGAAAACCGGGCTGTTCTCTGGCCTg < 1:925773/70‑1 (MQ=255) tGACGGTAATTGAAAACCTGCTGGTGGCGCAGCATCAGCAACTGAAAACCGGGCTGTTCTCTGGCCTGtt > 1:1088518/1‑70 (MQ=255) aCGGTAATTGAAAACCTGCTGGTGGCGCAGCATCAGCAACTGAAAACCGGGCTGTTCTCTGGCCTGTTGaa < 1:3619504/71‑1 (MQ=255) aCGGTAATTGAAAACCTGCTGGTGGCGCAGCATCAGCAACTGAAAACCGGGCTGTTCTCTGGCCTGTTGaa < 1:87456/71‑1 (MQ=255) aCGGTAATTGAAAACCTGCTGGTGGCGCAGCATCAGCAACTGAAAACCGGGCTGTTCTCTGGCCTGTTGaa < 1:3233943/71‑1 (MQ=255) aCGGTAATTGAAAACCTGCTGGTGGCGCAGCATCAGCAACTGAAAACCGGGCTGTTCTCTGGCCTGTTGa > 1:3508856/1‑70 (MQ=255) cGGTAATTGAAAACCTGCTGGTGGCGCAGCATCAGCAACTGAAAACCGGGCTGTTCTCTGGCCTGTTGaaa < 1:2297075/71‑1 (MQ=255) ggTAATTGAAAACCTGCTGGTGGCGCAGCATCAGCAACTGAAAACCGGGCTGTTCTCTGGCCTGTTGaaaa > 1:1819552/1‑71 (MQ=255) gTAATTGAAAACCTGCTGGTGGCGCAGCATCAGCAACTGAAAACCGGGCTGtt < 1:3635600/53‑1 (MQ=255) aaTTGAAAACCTGCTGGTGGCGCAGCATCAGCAACTGAAAACCGGGCTGTTCTCTGGCCTGTTGAAAACg < 1:2850627/70‑1 (MQ=255) aaTTGAAAACCTGCTGGTGGCGCAGCATCAGCAACTGAAAACCGGGCTGTTCTCTGGCCTGTTGAAAACGc > 1:1822094/1‑71 (MQ=255) aTTGAAAACCTGCTGGTGGCGCAGCATCAGCAACTGAAAACCgg > 1:3397102/1‑44 (MQ=255) aTTGAAAACCTGCTGGTGGCGCAGCATCAGCAACTGAAAACCgg > 1:50638/1‑44 (MQ=255) aTTGAAAACCTGCTGGTGGCGCAGCATCAGCAACTGAAAACCGGGCTGTTCTCTGGCCTGTTGAAAACGc > 1:2470361/1‑70 (MQ=255) ttGAAAACCTGCTGGTGGCGCAGCATCAGCAACTGaaaa < 1:380186/39‑1 (MQ=255) tGAAAACCTGCTGGTGGCGCAGCATCAGCAACTGAAAACCGGGCTGTtct > 1:3899599/1‑50 (MQ=255) gAAAACCTGCTGGTGGCGCAGCAT‑AGCAACTGAAAACCGGGCTGTTCTCTGGCCTGTTGAAAACGCCATcc > 1:744780/1‑71 (MQ=255) aaCCTGCTGGTGGCGCAGCATCAGCAACTGAAAACCGGGCTGTTCTCTGGCCTGTTGAAAACGCCATCCt > 1:606059/1‑70 (MQ=255) ccTGCTGGTTGCGCAGCATcagcaggttttcaattaccgtcatttcacggaacagacgcacatgctggaag > 1:1758699‑M2/1‑19 (MQ=255) ccTGCTGGTGGCGCAGCATcagcaggttttcaattaccgtcatttcacggaacagacgcacatgctggaag > 1:3141057‑M2/1‑19 (MQ=255) ccTGCTGGTGGCGCAGCATcagcaggttttcaattaccgtcatttcacggaacagacgcacatgctggaag > 1:2915875‑M2/1‑19 (MQ=255) ccTGCTGGTCGCGCAGCATcagcaggttttcaattaccgtcatttcacggaacagacgcacatgctggaag > 1:1754162‑M2/1‑19 (MQ=255) tgctgatgctgcgccaccagcaggttttcaattaccgtcatttcacggaacagacgcacatgctggaaggt > 1:3758355‑M1/1‑5 (MQ=255) tgctgGTGGCGCAGCATCAGCAACTGAAAACCGGGCTGTTCTCTGGCCTGTTGaaa < 1:3766810/56‑1 (MQ=255) gctgatgctgcgccaccagcaggttttcaattaccgtcatttcacggaacagacgcacatgctggaaggt < 1:3427720‑M1/70‑67 (MQ=255) ctgGTGGCGCAGCATCAGCAACTGAAAACCGGGCTGTTCTCTGGCCTGTTGAAAACGCCATCCTTCCGt < 1:1141317/69‑1 (MQ=255) ctgGTGGCGCAGCATCAGCAACTGAAAACCGGGCTGTTCTCTGGCCTGTTGAAAACGCCATCCTTCCGTc < 1:1511277/70‑1 (MQ=255) ctgGTGGCGCAGCATCAGCAACTGAAAACCGGGCTGTTCTCTGGCCTGTTGAAAACGCCATCCTTCCGTc < 1:918706/70‑1 (MQ=255) tggtggCGCAGCATcagcaggttttcaattaccgtcatttcacggaacagacgcacatgctg < 1:1091010‑M2/62‑49 (MQ=255) gatgctgcgccaccagcaggttttcaattaccgtcatttcacggaacagacg > 1:1020321‑M1/1‑1 (MQ=255) | GCATGGGCGTGGTGCGCACCTTCCAGCATGTGCGTCTGTTCCGTGAAATGACGGTAATTGAAAACCTGCTGGTGGCGCAGCATCAGCAACTGAAAACCGGGCTGTTCTCTGGCCTGTTGAAAACGCCATCCTTCCGTC > minE/2633218‑2633355 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |