| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 2275478 = | NA (NA) | 4 (0.090) | 3/90 | NT | 100% | noncoding (251/1542 nt) | rrsB | 16S ribosomal RNA |
| ? | minE | 2362809 = | 0 (0.000) | noncoding (274/1542 nt) | rrsA | 16S ribosomal RNA | |||||
TAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTA > minE/2362739‑2362879 | acgtcgcaagaccaaagagggggaccttcgggcctcttgccatcagatgtgcccagatgggattagctagt < 1:894910‑M2/1‑1 (MQ=255) gtcgcaagaccaaagagggggaccttcgggcctcttgccatcagatgtgcccagatgggattagctagtag > 1:3213221‑M2/69‑71 (MQ=255) gtcgcaagaccaaagagggggaccttcgggcctcttgccatcagatgtgcccagatgggattagctagtag > 1:1710308‑M2/69‑71 (MQ=255) tcgcaagaccaaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagTAgg > 1:3221420‑M2/68‑71 (MQ=255) tcgcaagaccaaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagTAgg < 1:812087‑M2/4‑1 (MQ=255) tcgcaagaccaaagagggggaccttcgggcctcttgccatcagatgtgcccagatgggattagctagTAgg < 1:916607‑M2/4‑1 (MQ=255) cgcaagaccaaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagTAGGt > 1:564408‑M2/67‑71 (MQ=255) cgcaagaccaaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagTAGGt > 1:2660550‑M2/67‑71 (MQ=255) gcaagaccaaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagTAGGt < 1:3223737‑M2/5‑1 (MQ=255) gcaagaccaaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagTAGGt < 1:3381493‑M2/5‑1 (MQ=255) gcaagaccaaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagTAGGTg < 1:708227‑M2/6‑1 (MQ=255) gcaagaccaaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagTAGGTg < 1:3227275‑M2/6‑1 (MQ=255) gcaagaccaaagagggggaccttcgggcctcttgccatcagatgtgcccagatgggattagctagta > 1:1189563‑M2/66‑67 (MQ=255) gcaagaccaaagagggggaccttcgggcctcttgccatcagatgtgcccagatgggattagctagTAGGTg < 1:2195321‑M2/6‑1 (MQ=255) gcaagaccaaagagggggaccttcgggcctcttgccatcagatgtgcccagatgggagtagctagTAGGTg > 1:2124280‑M2/66‑71 (MQ=255) caagaccaaagagggggaccttcgggccgcttgccatcggatgtgcccagatgggattagctagTAGGt < 1:3249320‑M2/5‑1 (MQ=255) ccaaagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagTAgg < 1:2555541‑M2/4‑1 (MQ=255) aagagggggaccttcgggcctcttgccatcggatgtgcccagatgggattagctagTAGGt > 1:1620420‑M2/57‑61 (MQ=255) cttcgggcctcttgccatcagatgtgcccagatgggattaactagTAGGt < 1:2645532‑M2/5‑1 (MQ=255) ttcgggcctcttgccatcggatgtgcccagatgtgattagctagTAgg < 1:2029362‑M2/4‑1 (MQ=255) ttcgggcctcttgccatcggatgtgcccagatgggattagctagTAgg < 1:2537008‑M2/4‑1 (MQ=255) ttcgggcctcttgccatcagatgtgcccagatgggattagctagTAGGTGAGCCGtt > 1:789486‑M2/45‑57 (MQ=255) ttcgggcctcttgccatcagatgtgcccagatgggattagctagTAGGTGAGCCGTTACCCCAGcta > 1:3044377‑M2/45‑67 (MQ=255) tcgggcctcttgccatcggatgtgcccagatgggattagctagTAgg > 1:1139242‑M2/44‑47 (MQ=255) tcgggcctcttgccatcggatgtgcccagatgggattagctagTAgg > 1:827995‑M2/44‑47 (MQ=255) gcctcttgccatcggatgtgcccagatgggattagctagTAGGTGAGCCGTTACCCCACctacta > 1:378007‑M2/40‑65 (MQ=255) cctcttgccatcggatgtgcccagatgggattagctagTAgg < 1:113386‑M2/4‑1 (MQ=255) tcttgccatcggatgtgcccagatgggattagctagTAGGt > 1:3313499‑M2/37‑41 (MQ=255) tcttgccatcggatgtgcccagatgggattagctagTAGGTg < 1:3746964‑M2/6‑1 (MQ=255) ttgccatcagatgtgcccagatgggattagctagTAGGTg > 1:1625156‑M2/35‑40 (MQ=255) ccagatgggattagctagTAGGTGAGCCGTTACCCCAcc > 1:2826512‑M2/19‑39 (MQ=255) TAGGTGAGCCGTTAGCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGc < 1:2480817‑M2/62‑1 (MQ=255) TAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGcaca < 1:1256886‑M2/46‑1 (MQ=255) TAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCTGATGGCAaga > 1:1209188‑M2/1‑59 (MQ=255) TAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAagag > 1:388312‑M2/1‑60 (MQ=255) TAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAg < 1:2521883‑M2/68‑1 (MQ=255) TAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAg > 1:3561013‑M2/1‑68 (MQ=255) TAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAg < 1:3192843‑M2/68‑1 (MQ=255) TAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTa > 1:2118712‑M2/1‑71 (MQ=255) TAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTa > 1:2073824‑M2/1‑71 (MQ=255) TAGGTGAGCCGTTACCCCACCTACTAGATAATCCCATCTGGGCACATCCGATGGCa < 1:3691907‑M2/56‑1 (MQ=255) | TAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTA > minE/2362739‑2362879 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |