| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 860365 | 47 (0.800) | 3 (0.060) | 3/90 | NT | 7.2% | coding (1536/1563 nt) | trpE | component I of anthranilate synthase |
| ? | minE | = 860375 | 36 (0.690) | coding (1526/1563 nt) | trpE | component I of anthranilate synthase | |||||
GTTGTACGTAAAAGAGTCGATATTATCGAGCAGCAGAATGTCAGCCATCAGAAAGTCTCCTGTGCATGATGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/860291‑860365‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgcgCTATTGCCACCGCGCATCATGCACAGGAGACTTTCTGATGGCTGACATTCTGCTGCTCGATAATATC < minE/860375‑860309 GTTGTACGTAAAAGAGTCGATATTATCGAGCAGCAGAATGTCAGCCATCAGAAAGTCTCCTGTGCATGATG > 1:1315413/1‑71GTTGTACGTAAAAGAGTCGATATTATCGAGCAGCAGAATGTCAGCCATCAGAAAGTCTCCTGTGCATGATG > 1:3204933/1‑71GTTGTACGTAAAAGAGTCGATATTATCGAGCAGCAGAATGTCAGCCATCAGAAAGTCTCCTGTGCATGATG > 1:3292451/1‑71 TGTACGTAAAAGAGTCGATATTATCGAGCAGCAGAATGTCAGCCATCAGAAAGTCTCCTGTGCATGATGCG > 1:1860767/1‑71 TGTACGTAAAAGAGTCGATATTATCGAGCAGCAGAATGTCAGCCATCAGAAAGTCTCCTGTGCATGATGCG > 1:3452734/1‑71 TGTACGTAAAAGAGTCGATATTATCGAGCAGCAGAATGTCAGCCATCAGAAAGTCTCCTGTGCATGATGC > 1:3253312/1‑70 TGTACGTAAAAGAGTCGATATTATCGAGCAGCAGAATGTCAGCCATCAGAAAGTCTCCTGTGCATGATGC > 1:798007/1‑70 TATTATCGAGCAGCAGAATGTCAGCCATCAGAAAGTCTCCTGTGCATGATGCGCGCTATTGCCACCGCG < 1:2532661/69‑1 TTATCGAGCAGCAGAATGTCAGCCATCAGAAAGTCTCCTGTGCATGATGCGCGCTATTGCCACCGCGCAT < 1:3047524/70‑1 TATCGAGCAGCAGAATGTCAGCCATCAGAAAGTCTCCTGTGCATGATGCGCG < 1:2337606/52‑1 ATCGAGCAGCAGAATGTCAGCCATCAGAAAGTCTCCTGTGCATGATGCGCGCTATTGCCACCGCGCA > 1:2698378/1‑67 CAGAATGTCAGCCATCAGAAAGTCTCCTGTGCATGATGCGCG < 1:1990600/42‑1 CAGAATGTCAGCCATCAGAAAGTCTCCTGTGCATGATGCGCG < 1:2614723/42‑1 CGCGCTATTGCCACCGCGCATCATGCACAGGAGACTTTCTGATGGCTGACATTCTGCTGCTCGATAATATC > 1:1684067/1‑71 CGCGCTATTGCCACCGCGCATCATGCACAGGAGACTTTCTGATGGCTGACATTCTGCTGCTCGATAATA < 1:709795/69‑1 GTTGTACGTAAAAGAGTCGATATTATCGAGCAGCAGAATGTCAGCCATCAGAAAGTCTCCTGTGCATGATGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/860291‑860365‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgcgCTATTGCCACCGCGCATCATGCACAGGAGACTTTCTGATGGCTGACATTCTGCTGCTCGATAATATC < minE/860375‑860309 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |