| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 1022294 = | 47 (0.800) | 4 (0.080) | 3/92 | NT | 8.9% | coding (1469/1812 nt) | uidA | beta‑D‑glucuronidase |
| ? | minE | 1022319 = | 40 (0.750) | coding (1444/1812 nt) | uidA | beta‑D‑glucuronidase | |||||
AACCGTTATTACGGATGGTATGTCCAAAGCGGCGATTTGGAAACGGCAGAGAAGGTACTGGAAAAAGAACTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/1022367‑1022294‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttctCTGCCGTTTCCAAATCGCCGCTTTGGACATACCATCCGTAATAACGGTTCAGGCACAGCACATCAA > minE/1022319‑1022384 AACCGTTATTACGGATGGTATGTCCAAAGCGGCGATTTGGAAACGGCAGAGAAGGTACTGGAAAAAGAACT < 1:3175187/71‑1AACCGTTATTACGGATGGTATGTCCAAAGCGGCGATTTGGAAACGGCAGAGAAGGTACTGGAAAAAGAAC < 1:2565274/70‑1 ACCGTTATTACGGATGGTATGTCCAAAGCGGCGATTTGGAAACGGCAGAGAAGGTACTGGAAAAAGAACTT < 1:101776/71‑1 CCGTTATTACGGATGGTATGTCCAAAGCGGCGATTTGGAAACGGCAGAGAAGGTACTGGAAAAAGAACTTC > 1:1644529/1‑71 CCGTTATTACGGATGGTATGTCCAAAGCGGCGATTTGGAAACGGCAGAGAAGGTACTGGAAAAAGAACTTC > 1:3281781/1‑71 AGAGAAGGTACTGGAAAAAGAACTTCTCTGCCGTTTCCAAATCGCCGCTTTGGACAT < 1:2005724/57‑1 AGAAGGTACTGGAAAAAGAACTTCTCTGCCGTTTCCAAATCGCCGCTTTTGACATAC > 1:2635381/1‑57 AGAAGGTACTGGAAAAAGAACTTCTCTGCCGTTTCCAAATCGCCGCTTTGGACATAC > 1:1108392/1‑57 GGTACTGGAAAAAGAACTTCTCTGCCGTTTCCAAATCGCCGCTTTGGACATACCATCCGTAATAACGGTT > 1:3154386/1‑70 CTTCTCTGCCGTTTCCAAATCGCCGCTTTGGACATACCATCCGTAATAACGGTTCAGGCACAGCACATCAA < 1:2172737/71‑1 TCTCTGCCGTTTCCAAATCGCCGCTTTGGACATACCATCCGTAATAACGGTTCAGGCACAGCACATCA > 1:222292/1‑68 CTCTGCCGTTTCCAAATCGCCGCTTTGGACATACCATCCGTAATAACGG < 1:1833772/49‑1 AACCGTTATTACGGATGGTATGTCCAAAGCGGCGATTTGGAAACGGCAGAGAAGGTACTGGAAAAAGAACTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/1022367‑1022294‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttctCTGCCGTTTCCAAATCGCCGCTTTGGACATACCATCCGTAATAACGGTTCAGGCACAGCACATCAA > minE/1022319‑1022384 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |