| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 1022294 = | 47 (0.800) | 4 (0.080) | 3/92 | NT | 8.9% | coding (1469/1812 nt) | uidA | beta‑D‑glucuronidase |
| ? | minE | 1022319 = | 40 (0.750) | coding (1444/1812 nt) | uidA | beta‑D‑glucuronidase | |||||
TATTCGGTGATGATAATCGGCTGATGCAGTTTCTCCTGCCAGGCCAGAAGTTCTTTTTCCAGTACCTTCTCTGCCGTTTCCAAATCGCCGCTTTGGACATACCATCCGTAATAACGGTTCAGGCACAGCACATCAA > minE/1022249‑1022384 | tATTCGGTGATGATAATCGGCTGATGCAGTTTCTCCTGCCAGGCCAGAAGTTCTTTTTCCAGTACCTtctc < 1:29259/71‑1 (MQ=255) ttCGGTGATGATAATCGGCTGATGCAGTTTCTCCTGCCAGGCCAGAAGTTCTTTTTCCAGTACCTTCTCTg < 1:2794714/71‑1 (MQ=255) ttCGGTGATGATAATCGGCTGATGCAGTTTCTCCTGCCAGGCCAGAAGTTCTTTTTCCAGTACCTTCTCTg < 1:2205984/71‑1 (MQ=255) ggTGATGATAATCGGCTGATGCAGTTTCTCCTGCCAGGCCAGAAGTTCTTTTTCCAGTACCTTCTCTGCCg > 1:2796804/1‑71 (MQ=255) atgatAATCGGCTGATGCAGTTTCTCCTGCCAGGCCAGAAGTTCTTTTTCCAGTACCTTCTCTGCCGttt < 1:3304097/70‑1 (MQ=255) tAATCGGCTGATGCAGTTTCTCCTGCCAGGCCAGAAGTTCTTTTTCCAGTACCTTCTCTGCCGTTTCCaaa > 1:3148783/1‑71 (MQ=255) aaTCGGCTGATGCAGTTTCTCCTGCCAGGCCAGAAGTTCTTTTTCCAGTACCTTCTCTGCCGTTTCCAAAt > 1:270023/1‑71 (MQ=255) atgtccaaagcggcgatttggaaacggcagAGAAGTTCTTTTTCCAGTACCTTctct < 1:2005724‑M1/27‑1 (MQ=255) gCTGATGCAGTTTCTCCTGCCAGGCCAGAAGTTCTTTTTCCAGTACCTTCTCTGCCGTTTCCAAATcgccg > 1:3110514/1‑71 (MQ=255) gCTGATGCAGTTTCTCCTGCCAGGCCAGAAGTTCTTTTTCCAGTACCTTCTCTGCCGTTTCCAAATcgccg > 1:2324580/1‑71 (MQ=255) tGATGCAGTTTCTCCTGCCAGGCCAGAAGTTCTTTTTCCAGTACCTtctc < 1:1416147/50‑1 (MQ=255) tGATGCAGTTTCTCCTGCCAGGCCAGAAGTTCTTTTTCCAGTACCTtctc < 1:2089901/50‑1 (MQ=255) tGCAGTTTCTCCTGCCAGGCCAGAAGTTCTTTTTCCAGTACCTTCTCTGCCGTTTCCAAATCGCCGCt < 1:2019643/68‑1 (MQ=255) tGCAGTTTCTCCTGCCAGGCCAGAAGTTCTTTTTCCAGTACCTTCTCTGCCGTTTCCAAATCGCCGCTTTg < 1:3090573/71‑1 (MQ=255) tGCAGTTTCTCCTGCCAGGCCAGAAGTTCTTTTTCCAGTACCTTCTCTGCCGTTTCCAAATCGCCGCTTTg < 1:1220730/71‑1 (MQ=255) tGCAGTTTCTCCTGCCAGGCCAGAAGTTCTTTTTCCAGTACCTTCTCTGCCGTTTCCAAATCGCCGCTTTg < 1:55576/71‑1 (MQ=255) gCAGTTTCTCCTGCCAGGCCAGAAGTTCTTTTTCCAGTACCTTCTCTGCCGTTTCCAAATCGCCGCTTTg > 1:1416927/1‑70 (MQ=255) gCAGTTTCTCCTGCCAGGCCAGAAGTTCTTTTTCCAGTACCTTCTCTGCCGTTTCCAAATCGCCGCTTTg > 1:3097813/1‑70 (MQ=255) cAGTTTCTCCTGCCAGGCCAGAAGTTCTTTTTCCAGTACCTTCTCTGCCGTTTCCAAATCGCCGCTTTgg < 1:1952540/70‑1 (MQ=255) aGTTTCTCCTGCCAGGCCAGAAGTTCTTTTTCCAGTACCTTCTCTGCCGTTTCCAAATCGCCGCTTTGGAc < 1:1255356/71‑1 (MQ=255) aGTTTCTCCTGCCAGGCCAGAAGTTCTTTTTCCAGTACCTTCTCTGCCGTTTCCAAATCGCCGCTTTGGAc < 1:3397149/71‑1 (MQ=255) ttCTCCTGCCAGGCCAGAAGTTCTTTTTCCAGTACCTTCTCTGCCGTTTc > 1:1943441/1‑50 (MQ=255) ctcCTGCCAGGCCAGAAGTTCTTTTTCCAGTACCTTctct < 1:3193211/40‑1 (MQ=255) ctcCTGCCAGGCCAGAAGTTCTTTTTCCAGTACCTTctct < 1:2294330/40‑1 (MQ=255) gccaggccagAAGTTCTTTTTCCAGTACCTTCTCTGCCGTTTc > 1:186368/1‑43 (MQ=255) gccaggccagAAGTTCTTTTTCCAGTACCTTCTCTGCCGTTTc > 1:3178902/1‑43 (MQ=255) ccaggccagAAGTTCTTTTTCCAGTACCTTCTCTGCCGTTTCCAAATCGCCGCTTTGGACATACCATCCGt < 1:1990483/71‑1 (MQ=255) ccaggccagAAGTTCTTTTTCCAGTACCTTCTCTGCCGTTTCCAAATCGCCGCTTTGGACATACCATCCGt < 1:2458397/71‑1 (MQ=255) ccaggccagAAGTTCTTTTTCCAGTACCTTCTCTGCCGTTTCCAAATCGCCGCTTTGGACATACCATCCGt < 1:1017985/71‑1 (MQ=255) ggccagAAGTTCTTTTTCCAGTACCTTCTCTGCCGTTTCCAAATcgccg > 1:898030/1‑49 (MQ=255) ccagAAGTTCTTTTTCCAGTACCTTCTCTGCCGTTTCCAAATCGCCGCTTTg < 1:1446866/52‑1 (MQ=255) ccagAAGTTCTTTTTCCAGTACCTTCTCTCCCGTTTCCAAATCGCCGCTTTg < 1:1531456/52‑1 (MQ=255) agagaaggtactggaaaaagaacttctCTGCCGTTTCCAAATCGCCGCTTTGGACAt < 1:2005724‑M2/30‑1 (MQ=255) cagAAGTTCTTTTTCCAGTACCTTCTCTGCCGTTTCCAAATcg < 1:3637206/43‑1 (MQ=255) cagAAGTTCTTTTTCCAGTACCTTCTCTGCCGTTTCCAAATcg < 1:2175995/43‑1 (MQ=255) cagAAGTTCTTTTTCCAGTACCTTCTCTGCCGTTTCCAAATcg < 1:1339113/43‑1 (MQ=255) cagAAGTTCTTTTTCCAGTACCTTCTCTGCCGTTTCCAAATcg < 1:182891/43‑1 (MQ=255) cagAAGTTCTTTTTCCAGTACCTTCTCTGCCGTTTCCAAATCGCCGCTTTGGACATACCATCCGTAATAAc > 1:2311773/1‑71 (MQ=255) agaaggtactggaaaaagaacttctCTGCCGTTTCCAAATCGCCGCTTTTGACATAc > 1:2635381‑M2/26‑57 (MQ=255) agaaggtactggaaaaagaacttctCTGCCGTTTCCAAATCGCCGCTTTGGACATAc > 1:1108392‑M2/26‑57 (MQ=255) GAAGTTCTTTTTCCAGTACCTTCTCTGCCGTTTCCAAATCGCCGCTTTGGACATACCATCCGTAATAACgg > 1:3281781‑M1/1‑71 (MQ=255) GAAGTTCTTTTTCCAGTACCTTCTCTGCCGTTTCCAAATCGCCGCTTTGGACATACCATCCGTAATAACgg > 1:1644529‑M1/1‑71 (MQ=255) AAGTTCTTTTTCCAGTACCTTCTCTGCCGTTTCCAAATCGCCGCTTTGGACATACCATCCGTAATAACGGt < 1:101776‑M1/71‑1 (MQ=255) AGTTCTTTTTCCAGTACCTTCTCTGCCGTTTCCAAATCGCCGCTTTGGACATACCATCCGTAATAACGGtt < 1:3175187‑M1/71‑1 (MQ=255) ggtactggaaaaagaacttctCTGCCGTTTCCAAATCGCCGCTTTGGACATACCATCCGTAATAACGGtt > 1:3154386‑M2/22‑70 (MQ=255) GTTCTTTTTCCAGTACCTTCTCTGCCGTTTCCAAATCGCCGCTTTGGACATACCATCCGTAATAACGGtt < 1:2565274‑M1/70‑1 (MQ=255) ttCTTTTTCCAGTACCTTCTCTGCCGTTTCCAAATCGCCGCTTTGGACATACCATCCGTAATAACGGTTCa < 1:2235932/71‑1 (MQ=255) tCTTTTTCCAGTACCTTCTCTGCCGTTTCCAAATCGCCGCTTTGGACATACCATCCGTAATAACGGTTCAg > 1:1792424/1‑71 (MQ=255) tCTTTTTCCAGTACCTTCTCTGCCGTTTCCAAATCGCCGCTTTGGACATACCATCCGTAATAACGGTTCAg > 1:803019/1‑71 (MQ=255) cTTTTTCCAGTACCTTCTCTGCCGTTTCCAAATCGCCGCttt < 1:468429/42‑1 (MQ=255) ttttCCAGTACCTTCTCTGCCGTTTCCAAATCGCCGCTTTGGACATACCATCCGTAATAACGGTTCAGgca > 1:3498615/1‑71 (MQ=255) tttCCAGTACCTTCTCTGCCGTTTCCAAATCGCCGCTTTGGa > 1:3191100/1‑42 (MQ=255) tttCCAGTACCTTCTCTGCCGTTTCCAAATCGCCGCTTTGGa > 1:596588/1‑42 (MQ=255) tttCCAGTACCTTCTCTGCCGTTTCCAAATCGCCGCTTTGGa > 1:87957/1‑42 (MQ=255) tttCCAGTACCTTCTCTGCCGTTTCCAAATCGCCGCTTTGGACATACCATCCGTAATAACGGTTCAGgc < 1:2159244/69‑1 (MQ=255) ccAGTACCTTCTCTGCCGTTTCCAAATCGCCGCTTTGGACATACCATCCGTAATAACGGTTCAGgcacag > 1:2838097/1‑70 (MQ=255) ccAGTACCTTCTCTGCCGTTTCCAAATCGCCGCTTTGGACATACCATCCGTAATAACGGTTCAGgcacag > 1:1068425/1‑70 (MQ=255) ccTTCTCTGCCGTTTCCAAATCGCCGCTTTGGACATACCATCCGTAATAACGGTTCAGGCACAGCACATCa < 1:3073816/71‑1 (MQ=255) cttctCTGCCGTTTCCAAATCGCCGCTTTGGACATACCATCCGTAATAACGGTTCAGGCACAGCACATCaa < 1:2172737‑M2/66‑1 (MQ=255) tctCTGCCGTTTCCAAATCGCCGCTTTGGACATACCATCCGTAATAACGGTTCAGGCACAGCACATCa > 1:222292‑M2/4‑68 (MQ=255) ctCTGCCGTTTCCAAATCGCCGCTTTGGACATACCATCCGTAATAACgg < 1:1833772‑M2/47‑1 (MQ=255) | TATTCGGTGATGATAATCGGCTGATGCAGTTTCTCCTGCCAGGCCAGAAGTTCTTTTTCCAGTACCTTCTCTGCCGTTTCCAAATCGCCGCTTTGGACATACCATCCGTAATAACGGTTCAGGCACAGCACATCAA > minE/1022249‑1022384 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |