| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 1275427 = | 73 (1.240) | 4 (0.080) | 3/82 | NT | 7.6% | intergenic (+91/‑252) | yodA/yodB | conserved metal‑binding protein/predicted cytochrome |
| ? | minE | 1275460 = | 39 (0.820) | intergenic (+124/‑219) | yodA/yodB | conserved metal‑binding protein/predicted cytochrome | |||||
TATGGAATCCGTTATTGGTTAACTCAATGCGGGTTAGCTTATTAATATACAGACACGTCATAGTGATGAGCGTGTCTGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/1275506‑1275427‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtgtctgtaTATTAATAAGCTAACCCGCATTGAGTTAACCAATAACGGATTCCATACACAATACGGCCAACAGAGA > minE/1275460‑1275526 TATGGAATCCGTTATTGGTTAACTCAATGCGGGTTAGCTTATTAATATACAGACACGTCATAGTGATGAGC < 1:1322687/71‑1 TGGAATCCGTTATTGGTTAACTCAATGCGGGTTAGCTTATTAATATACAGACACGTCATAGTGATGAGCGT < 1:1199967/71‑1 TGGAATCCGTTATTGGTTAACTCAATGCGGGTTAGCTTATTAATATACAGACACGTCATAGTGATGAGCGT < 1:1686038/71‑1 GAATCCGTTATTGGTTAACTCAATGCGGGTTAGCTTATTAATATACAGACACGTCATAGTGATGAGCGTGT < 1:1370198/71‑1 GAATCCGTTATTGGTTAACTCAATGCGGGTTAGCTTATTAATATACAGACACGTCATAGTGATGAGCGTGT > 1:141299/1‑71 GAATCCGTTATTGGTTAACTCAATGCGGGTTAGCTTATTAATATACAGACACGTCATAGTGATGAGCGTGT < 1:3710680/71‑1 GAATCCGTTATTGGTTAACTCAATGCGGGTTAGCTTATTAATATACAGACACGTCATAGTGATGAGCGTGT < 1:1880246/71‑1 GAATCCGTTATTGGTTAACTCAATGCGGGTTAGCTTATTAATATACAGACACGTCATAGTGATGAGCGTGT > 1:3494359/1‑71 GAATCCGTTATTGGTTAACTCAATGCGGGTTAGCTTATTAATATACAGACACGTCATAGTGATGAGCGTGT > 1:2246405/1‑71 AATCCGTTATTGGTTAACTCAATGCGGGTTAGCTTATTAATATACAGACACGTCATAGTGATGAGCGTGTC > 1:411561/1‑71 AATCCGTTATTGGTTAACTCAATGCGGGTTAGCTTATTAATATACAGACACGTCATAGTGATGAGCGTGTC > 1:1140553/1‑71 ATCCGTTATTGGTTAACTCAATGCGGGTTAGCTTATTAATATACAGACACGTCATAGTGATGAGCGTGTCT > 1:1849003/1‑71 TCCGTTATTGGTTAACTCAATGCGGGTTAGCTTATTAATATACAGACACGTCATAGTGATGAGCGTGTCTG < 1:1997438/71‑1 TCCGTTATTGGTTAACTCAATGCGGGTTAGCTTATTAATATACAGACACGTCATAGTGATGAGCG > 1:3218545/1‑65 ACAGACACGTCATAGTGATGAGCGTGTCTGTATATTAATAAGCTAACCCGCATTGAGTTAACCAATAAC < 1:2145909/69‑1 ACACGTCATAGTGATGAGCGTGTCTGTATATTAATAAGCTAACCCGCATTGAGTTAACCAATAACGGATTC < 1:1393826/71‑1 CATAGTGATGAGCGTGTCTGTATATTAATAAGCTAA < 1:265660/36‑1 CATAGTGATGAGCGTGTCTGTATATTAATAAGCTAA < 1:2034318/36‑1 CGTGTCTGTATATTAATAAGCTAACCCGCATTGAGTTAACCAATAACGGATTCCATACACAATACGGCCAA < 1:98278/71‑1 CGTGTCTGTATATTAATAAGCTAACCCGCATTGAG > 1:3424001/1‑35 CGTGTCTGTATATTAATAAGCTAACCCGCATTGAG > 1:1947667/1‑35 TGTCTGTATATTAATAAGCTAACCCGCATTGAGTTAACCAATAACGGATTC < 1:2182280/51‑1 TGTCTGTATATTAATAAGCTAACCCGCATTGAGTTAACCAATAACGGATTC < 1:3470302/51‑1 TCTGTATATTAATAAGCTAACCCGCATTGAGTTAACCAATAACGGATTCCATACACAATACTGCCAACAG < 1:2656485/70‑1 TGTATATTAATAAGCTAACCCGCATTGAGTTAACCAATAACGGATTCCA < 1:2862562/49‑1 GTATATTAATAAGCTAACCCGCATTGAGTTAACCAATAACGGATTCCATACACAATACG < 1:3526978/59‑1 TATATTAATAAGCTAACCCGCATTGAGTTAACCAATAACGGATTCCATACACAATACGGCCAACAGAGA > 1:2050539/1‑69 TATATTAATAAGCTAACCCGCATTGAGTTAACCAATAACGGATTCCATACACAA > 1:1738663/1‑54 ATATTAATAAGCTAACCCGCATTGAGTTAACCAATAACGGATTCCATACACAATACGGCCAACAGAGA > 1:236947/1‑68 TATGGAATCCGTTATTGGTTAACTCAATGCGGGTTAGCTTATTAATATACAGACACGTCATAGTGATGAGCGTGTCTGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/1275506‑1275427‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtgtctgtaTATTAATAAGCTAACCCGCATTGAGTTAACCAATAACGGATTCCATACACAATACGGCCAACAGAGA > minE/1275460‑1275526 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |