| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 2281412 = | 33 (0.560) | 9 (0.170) | 4/94 | NT | 21.6% | intergenic (‑92/‑185) | fabR/sthA | DNA‑binding transcriptional repressor/pyridine nucleotide transhydrogenase, soluble |
| ? | minE | 2281464 = | 35 (0.640) | intergenic (‑144/‑133) | fabR/sthA | DNA‑binding transcriptional repressor/pyridine nucleotide transhydrogenase, soluble | |||||
TGTCTGTTTCTTACTTTTGCCCTGACGTTTTATTGGATTTTTATCGACGATACTCTCCGTTTAAGCGGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/2281483‑2281412‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggGCAAAAGTAAGAAACAGACAAAGCAAAGGCCGCTCAGGATATAGCCAGATAAATGACGGGGATCA > minE/2281464‑2281528 TGTCTGTTTCTTACTTTTGCCCTGACGTTTTATTGGATTTTTATCGACGATACTCTCCGTTTAAGCGGC < 1:2784200/69‑1TGTCTGTTTCTTACTTTTGCCCTGACGTTTTATTGGATTTTTATCGACGATACTCTCCGTTTAAGCGGC < 1:338702/69‑1 GTCTGTTTCTTACTTTTGCCCTGACGTTTTATTGGATTTTTATCGACGATACTCTCCGTTTAAGCGGCAG < 1:1911719/70‑1 GTCTGTTTCTTACTTTTGCCCTGACGTTTTATTGGATTTTTATCGACGATACTCTCCGTTTAAGCGGCAG < 1:890789/70‑1 TCTGTTTCTTACTTTTGCCCTGACGTTTTATTGGATTTTTATCGACGATACTCTCCGTTTAAGCGGCAGG < 1:1015438/70‑1 CGTTTTATTGGATTTTTATCGACGATACTCTCCGTTTAAGCGGCAGGGCAAAAGTAAGAAACAGACAAAG > 1:2249588/1‑70 CGTTTTATTGGATTTTTATCGACGATACTCTCCGTTTAAGCGGCAGGGCAAAAGTAAGAAACAGACAAAG > 1:2550332/1‑70 CGTTTTATTGGATTTTTATCGACGATACTCTCCGTTTAAGCGGCAGGGCAAAAGTAAGAAACAGACAAAG > 1:42459/1‑70 TTGGATTTTTATCGACGATACTCTCCGTTTAAGCGGCAGGGCAAAAGTAAGAAACAGACAAATCAAAGGC < 1:2712713/70‑1 GATTTTTATCGACGATACTCTCCGTTTAAGCGGCAGGGCAAAAGTAAGAAACAGACAAAGCAAAGGCCGC < 1:2340282/70‑1 GATTTTTATCGACGATACTCTCCGTTTAAGCGGCAGGGCAAAAGTAAGAAACAGACAAAGCAAAGGCCGC < 1:2685292/70‑1 ACTCTCCGTTTAAGCGGCAGGGCAAAAGTAAGAAA > 1:18499/1‑35 ACTCTCCGTTTAAGCGGCAGGGCAAAAGTAAGAAA > 1:269323/1‑35 ACTCTCCGTTTAAGCGGCAGGGCAAAAGTAAGAAA > 1:3636353/1‑35 aCAGGGCAAAAGTAAGAAACAGACAAAGCAAAGGCCGCTCAGGATATAGCCAGATAAATGACGGGGATCA > 1:2244626/2‑70 TGTCTGTTTCTTACTTTTGCCCTGACGTTTTATTGGATTTTTATCGACGATACTCTCCGTTTAAGCGGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/2281483‑2281412‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggGCAAAAGTAAGAAACAGACAAAGCAAAGGCCGCTCAGGATATAGCCAGATAAATGACGGGGATCA > minE/2281464‑2281528 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |