| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 2298366 | 16 (0.270) | 3 (0.060) | 3/88 | NT | 16.3% | intergenic (‑296/+33) | katG/metF | catalase/hydroperoxidase HPI(I)/5,10‑methylenetetrahydrofolate reductase |
| ? | minE | = 2298380 | 17 (0.330) | intergenic (‑310/+19) | katG/metF | catalase/hydroperoxidase HPI(I)/5,10‑methylenetetrahydrofolate reductase | |||||
GAGAAAACAAGGCTGATAACCTTATTTTCCCGCCCTCATTTCGAGGCAGCATTTTGTGCTCTGTTTAAAATTTGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/2298290‑2298366‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttgtgaAAATCACACAGTGATCACAAATTTTAAACAGAGCACAAAATGCTGCCTCGAAATGAGGGCGGGAAAATAA < minE/2298380‑2298311 GAGAAAACAAGGCTGATAACCTTATTTTCCCGCCCTCATTTCGAGGCAGCATTTTGTGCTCTGTTTAAAAT < 1:2432110/71‑1GAGAAAACAAGGCTGATAACCTTATTTTCCCGCCCTCATTTCGAGGCAGCATTTTGTGCTCTGTTTAAAAT < 1:1611607/71‑1 AGAAAACAAGGCTGATAACCTTATTTTCCCGCCCTCATTTCGAGGCAGCATTTTGTGCTCTGTTTAAAAT < 1:1855473/70‑1 AAAACAAGGGTGATAACCTTATTTTCCCGCCCTCATTTCGAGGCAGCATTTTGTGCTCTGTTTAAAATTTG > 1:1557398/1‑71 AAAACAAGGCTGATAACCTTATTTTCCAGCCCTCATTTCGAGGCAGCATTTTGTGCTCTGTTTAAAATTTG > 1:330453/1‑71 ACAAGGCTGATAACCTTATTTTCCCGCCCTCATTTCGAGGCAGCATTTTGTGCTCTGTTTAAAATTTGTGA > 1:752978/1‑71 TAACCTTATTTTCCCGCCCTCATTTCGAGGCAGCATTTTGTGCTCTGTTTAAAATTTG > 1:1817441/1‑58 TAACCTTATTTTCCCGCCCTCATTTCGAGGCAGCATTTTGTGCTCTGTTTAAAATT < 1:3668919/56‑1 TAACCTTATTTTCCCGCCCTCATTTCGAGGCAGCATTTTGTGCTCTGTTTAAAATT < 1:812965/56‑1 TATTTTCCCGCCCTCATTTCGAGGCAGCATTTTGTGCTCTGTTTAAAATTTGTGAAAATCACACAGTGAT > 1:3480142/1‑70 AGGCAGCATTTTGTGCTCTGTTTAAAATTTGTGAAAATCACACAGTGA < 1:203471/48‑1 GCAGCATTTTGTGCTCTGTTTAAAATTTGTGAAAATCACACAGTGATC > 1:2404234/1‑48 TTGTGAAAATCACACAGTGATCACAAATTTTAAACAGAGCACAAAATGCTGCCTCGAAATGAGGGCGGGA > 1:2511086/1‑70 GAAAATCACACAGTGATCACAAATTTTAAACAGAGCACAAAATGCTGCCT < 1:1677158/50‑1 GAAAATCACACAGTGATCACAAATTTTAAACAGAGCACAAAATGCTGCCT < 1:2263218/50‑1 GAAAATCACACAGTGATCACAAATTTTAAACAGAGCACAAAATGCTGCCT < 1:3290096/50‑1 GAAAATCACACAGTGATCACAAATTTTAAACAGAGCACAAAATGCTGCCT < 1:3295302/50‑1 GAAAATCACACAGTGATCACAAATTTTAAACAGAGCACAAAATG > 1:687562/1‑44 AAAATCACACAGTGATCACAAATTTTAAACAGAGCACAAAATGCTGCCTCGAAATGAGGGCGGGAAAATAA < 1:1367497/71‑1 GAGAAAACAAGGCTGATAACCTTATTTTCCCGCCCTCATTTCGAGGCAGCATTTTGTGCTCTGTTTAAAATTTGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/2298290‑2298366‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttgtgaAAATCACACAGTGATCACAAATTTTAAACAGAGCACAAAATGCTGCCTCGAAATGAGGGCGGGAAAATAA < minE/2298380‑2298311 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |