| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 2298366 | 16 (0.270) | 3 (0.060) | 3/88 | NT | 16.3% | intergenic (‑296/+33) | katG/metF | catalase/hydroperoxidase HPI(I)/5,10‑methylenetetrahydrofolate reductase |
| ? | minE | = 2298380 | 17 (0.330) | intergenic (‑310/+19) | katG/metF | catalase/hydroperoxidase HPI(I)/5,10‑methylenetetrahydrofolate reductase | |||||
CTTATTTTCCCGCCCTCATTTCGAGGCAGCATTTTGTGCTCTGTTTAAAATTTGTGATCACTGTGTGATTTTCACAAAAGCCACACTATTTATAAACCAGGTCGAACCCCCAGCGTATGGCAAATCGCGTAACTCATTT > minE/2298310‑2298448 | cTTATTTTCCCGCCCTCATTTCGAGGCAGCATTTTGTGCTCTGTTTAAAATTTGTGATCACTGTGTGAttt < 1:137433/71‑1 (MQ=255) ttATTTTCCCGCCCTCATTTCGAGGCAGCATTTTGTGCTCTGTTTAAAATTTGTGATCACTGTGTGATTTt < 1:1367497‑M2/71‑2 (MQ=255) tCCCGCCCTCATTTCGAGGCAGCATTTTGTGCTCTGTTTAAAATTTGTGATCACTGTGTGATTTtcacaa > 1:2511086‑M2/1‑64 (MQ=255) gCCCTCATTTCGAGGCAGCATTTTGTGCTCTGTTTAAAATTTGTGATCACTGTGTGATTTTCACAAAAg > 1:3125840/1‑69 (MQ=255) cGAGGCAGCATTTTGTGCTCTGTTTAAAATTTGTGATCACTGTGTGATTTTCACAAAAg > 1:994336/1‑59 (MQ=255) aGGCAGCATTTTGTGCTCTGTTTAAAATTTGTGATCACTGTGTGATTTtc < 1:1677158‑M2/50‑3 (MQ=255) aGGCAGCATTTTGTGCTCTGTTTAAAATTTGTGATCACTGTGTGATTTtc < 1:3295302‑M2/50‑3 (MQ=255) aGGCAGCATTTTGTGCTCTGTTTAAAATTTGTGATCACTGTGTGATTTtc < 1:3290096‑M2/50‑3 (MQ=255) aGGCAGCATTTTGTGCTCTGTTTAAAATTTGTGATCACTGTGTGATTTtc < 1:2263218‑M2/50‑3 (MQ=255) agcaTTTTGTGCTCTGTTTAAAATTTGTGATCACTGTGTGATTTTCACAAAAGCCACACTATTTATAAAcc < 1:3230817/71‑1 (MQ=255) caTTTTGTGCTCTGTTTAAAATTTGTGATCACTGTGTGATTTtc > 1:687562‑M2/1‑42 (MQ=255) aTTTTGTGCTCTGTTTAAAATTTGTGATCACTGTGTGATTTTCACAAAAGCCACACTATTTATAAACCAgg < 1:2377995/71‑1 (MQ=255) gtgCTCTGTTTAAAATTTGTGATCACTGTGTGATTTTCACAAAAGCCACACTATTTATAAACCAGGTCGaa > 1:2344007/1‑71 (MQ=255) tctGTTTAAAATTTGTGATCACTGTGTGATTTTCACAAAAGCCACACTATTTATAAACCAGGt > 1:2997953/1‑63 (MQ=255) tttAAAATTTGTGATCACTGTGTGATTTTCACAAAAGCCACACTATTTATAAACCAGGTCGAACCCCCAg < 1:2270448/70‑1 (MQ=255) tttAAAATTTGTGATCACTGTGTGATTTTCACAAAAGCCACACTATTTATAAACCAGGTCGAACCCCCAg < 1:3003703/70‑1 (MQ=255) tAAAATTTGTGATCACTGTGTGATTTTCACAAAAGCCACACTATTTATAAACCAGGTCGAACCCCCAGCg < 1:2090376/70‑1 (MQ=255) aaaTTTGTGATCACTGTGTGATTTTCACAAAAGCCACACTATTTATAAACCAGGTCGAACCCCCAGCGTa > 1:60994/1‑70 (MQ=255) ttGTGATCACTGTGTGATTTTCACAAAAGCCACACTATTTATAAACCAGGTCGAACCCCCAGCGTATGGc > 1:1263120/1‑70 (MQ=255) tgtgATCACTGTGTGATTTTCACAAAAGCCACACTATTTATAAACCAGGTCGAACCCCCAGCGTATGGCa > 1:693890/1‑70 (MQ=255) tgATCACTGTGTGATTTTCACAAAAGCCACACTATTTATAAACCAGGTCGAACCCCCAGCGTATGGCAAAt < 1:1750458/71‑1 (MQ=255) gATCACTGTGTGATTTtcacaaattttaaacagagcacaaaatgctgc > 1:2404234‑M2/1‑16 (MQ=255) aTCACTGTGTGATTTtcacaaattttaaacagagcacaaaatgctgcctcgaaatgagggcgggaaaata > 1:3480142‑M2/1‑15 (MQ=255) aTCACTGTGTGATTTTCACAAAAGCCACACTATTTATAAACCAGGTCGAACCCCCAGCGTATGGCAAATcg > 1:3308072/1‑71 (MQ=255) aTCACTGTGTGATTTTCACAAAAGCCACACTATTTATAAACCAGGTCGAACCCCCAGCGTATGGCAAATc > 1:1771550/1‑70 (MQ=255) tCACTGTGTGATTTtcacaaattttaaacagagcacaaaatgctgcct < 1:203471‑M2/48‑35 (MQ=255) cTGTGTGATTTTCACAAAAGCCACACTATTTATAAACCAGGTCGa > 1:3389168/1‑45 (MQ=255) tgtgtgATTTTCACAAAAGCCACACTATTTATAAACCAGGTCGAACCCCCAGCGTATGGCAAATCGCGTaa > 1:3553590/1‑71 (MQ=255) tgtgATTTTCACAAAAGCCACACTATTTATAAACCAGGTCGAACCCCCAGCGTATGGCAAATCGCGTaa < 1:2992888/69‑1 (MQ=255) gtgATTTTCACAAAAGCCACACTATTTATAAACCAGGTCGAACCCCCAGCGTATGGCAAAt > 1:1431161/1‑61 (MQ=255) gATTTTCACAAAAGCCACACTATTTATAAACCAGGTCGAAccccc > 1:3712897/1‑45 (MQ=255) gATTTTCACAAAAGCCACACTATTTATAAACCAGGTCGAAccccc > 1:1605673/1‑45 (MQ=255) aTTTTCACAAAAGCCACACTATTTATAAACCAGGTCGAACCCCCAGCGTATGGCAAATCGCGTAACTCAtt > 1:1020277/1‑71 (MQ=255) ttttCACAAAAGCCACACTATTTATAAACCAGGTCGAACCCCCAGCGTATGGCaa < 1:2728777/55‑1 (MQ=255) tttCACAAAAGCCACACTATTTATAAACCAGGTCGCACCCCCAGCGTATGGCAAATCGCGTAACTCAttt > 1:736954/1‑70 (MQ=255) tttCACAAAAGCCACACTATTTATAAACCAGGTCGAAc < 1:696849/38‑1 (MQ=255) tttCACAAAAGCCACACTATTTATAAACCAGGTCGAACCCCCAGCGTATGGCAAATCGCGTAACTCAttt > 1:3039902/1‑70 (MQ=255) ttCACAAAAGCCACACTATTTATAAACCAGGTCGAACCCCCAGCGTATGGCAAAt > 1:2993266/1‑55 (MQ=255) | CTTATTTTCCCGCCCTCATTTCGAGGCAGCATTTTGTGCTCTGTTTAAAATTTGTGATCACTGTGTGATTTTCACAAAAGCCACACTATTTATAAACCAGGTCGAACCCCCAGCGTATGGCAAATCGCGTAACTCATTT > minE/2298310‑2298448 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |