| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 2577253 = | 110 (1.860) | 6 (0.110) | 3/94 | NT | 5.8% | coding (846/1650 nt) | treF | cytoplasmic trehalase |
| ? | minE | 2577286 = | 95 (1.750) | coding (813/1650 nt) | treF | cytoplasmic trehalase | |||||
CCTAATCAGGCCTATCGCCATGTTGTGCGGATGCCGGACGGATCGCTGCTCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/2577306‑2577253‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caacATGGCGATAGGCCTGATTAGGGATTAACGATTCTGCACCGTCCATCCAGAAGGCATATTCCATTTT > minE/2577286‑2577351 CCTAATCAGGCCTATCGCCATGTTGTGCGGATGCCGGACGGATCGCTGCTCAA > 1:1103682/1‑53CCTAATCAGGCCTATCGCCATGTTGTGCGGATGCCGGACGGATCGCTGCTCAA > 1:453267/1‑53 ATCGCCATGTTGTGCGGATGCCGGACGGATCGCTGCTCAA > 1:2452967/1‑40 CCATGTTGTGCGGATGCCGGACGGATCGCTGCTCAACATGGCGATAGGCCTGATTAGGGATTAACGATT < 1:100349/69‑1 ATGTTGTGCGGATGCCGGACGGTTCGCTGCTCAACATGGCGATAGGCCTGATTAGGGATTAACGATTCT > 1:1248587/1‑69 GTGCGGATGCCGGACGGATCGCTGCTCAACATGGCGATA < 1:1303232/39‑1 GTGCGGATGCCGGACGGATCGCTGCTCAACATGGCGATA < 1:1778724/39‑1 GTGCGGATGCCGGACGGATCGCTGCTCAACATGGCGATA < 1:3457374/39‑1 TGCGGATGCCGGACGGATCGCTGCTCAACATGGCGATA < 1:1529023/38‑1 AACATGGCGATAGGCCTGATTAGGGATTAACGATTCTGCACCGTCCATCCAGAAGGCATATTCCATTTT > 1:754071/1‑69 AACATGGCGATAGGCCTGATTAGGGATTAACGATTCTGCACCGTCCAT > 1:1970223/1‑48 AACATGGCGATAGGCCTGATTAGGGATTAACGATTCTGCACCGTCCAT > 1:3363242/1‑48 AACATGGCGATAGGCCTGATTAGGGATTAACGATTCTGCACCGTCCAT > 1:3584671/1‑48 AACATGGCGATAGGCCTGATTAGGGATTAACGATTCTGCACCGTCCAT > 1:371018/1‑48 CCTAATCAGGCCTATCGCCATGTTGTGCGGATGCCGGACGGATCGCTGCTCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/2577306‑2577253‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caacATGGCGATAGGCCTGATTAGGGATTAACGATTCTGCACCGTCCATCCAGAAGGCATATTCCATTTT > minE/2577286‑2577351 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |