| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 2581882 = | 88 (1.490) | 7 (0.130) | 4/92 | NT | 9.2% | coding (3/825 nt) | gadX | DNA‑binding transcriptional dual regulator |
| ? | minE | 2581912 = | 59 (1.110) | coding (33/825 nt) | gadX | DNA‑binding transcriptional dual regulator | |||||
ATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/2581955‑2581882‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attgcGTATGCAAGACATAAATATATTCTCACCATGGTTAATGGTGAATATCGCTATTTTAATGGCGGTGAC > minE/2581912‑2581978 ATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGAT > 1:1395598/1‑71 TAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATT > 1:1256758/1‑63 TAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATT > 1:2957543/1‑63 TAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATT > 1:1339868/1‑63 CATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATT > 1:1086179/1‑59 CATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATT > 1:2284277/1‑59 GGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGAT > 1:1660151/1‑55 ATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTG < 1:2929287/46‑1 ATTTATGTCTTGCATACGCAATTAGACAATT‑‑CATGTAGTGATTG < 1:2947426/44‑1 TTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATT > 1:3210371/1‑44 TTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATT > 1:908158/1‑44 TTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATT > 1:549055/1‑44 TTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATT > 1:473366/1‑44 TTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATT > 1:1268754/1‑44 TTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATT > 1:2215199/1‑44 GCAATTAGACAATTCCCATGTAGTGATTGCGTATGCAAGACATAAATATA < 1:1789706/50‑1 GCAATTAGACAATTCCCATGTAGTGATTGCGTATGCAAGACATAAATATA < 1:706340/50‑1 AATTAGACAATTCCCATGTAGTGATTGCGTATGCAAGACATAAATATATTCTCA < 1:3439932/54‑1 AATTAGACAATTCCCATGTAGTGATTGCGTATGCAAGACATAAATATATTCTCA < 1:848252/54‑1 AATTAGACAATTCCCATGTAGTGATTGCGTATGCAAGACATAAATATATT > 1:2733048/1‑50 AGACAATTCCCATGTAGTGATTGCGTATGCAAGACATAAATATATTCTCACCATGTTTAATGGTGAATAT < 1:785598/70‑1 AGACAATTCCCATGTAGTGATTGCGTATGCAAGACATAAATATATTCTCACCATGGTTAATGGTGAATAT < 1:3178299/70‑1 ATTGCGTATGCAAGACATAAATATGTTCTCACCATGGTTAATGGTGAATATCGCTATTTTAATGGCGGTGA < 1:496537/71‑1 ATTGCGTATGCAAGACATAAATATATTCTCACCATGGTTAATGGTGAATATCGCTATTTTAATGGCGGTGA < 1:1701463/71‑1 TTGCGTATGCAAGACATAAATATATTCTCACCATGGTTAATGGTGAATATCGCTATTTTAATGGCGGTGAC < 1:2051956/71‑1 TTGCGTATGCAAGACATAAATATATTCTCACCATGGTTAATGGTGAATATCGCTATTTTAATGGCGGTGAC < 1:2100782/71‑1 ATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/2581955‑2581882‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attgcGTATGCAAGACATAAATATATTCTCACCATGGTTAATGGTGAATATCGCTATTTTAATGGCGGTGAC > minE/2581912‑2581978 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |