| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 2889932 = | 99 (1.680) | 7 (0.130) | 3/96 | NT | 8.3% | coding (287/639 nt) | msrA | methionine sulfoxide reductase A |
| ? | minE | 2889960 = | 62 (1.120) | coding (259/639 nt) | msrA | methionine sulfoxide reductase A | |||||
GCTATACCGGCGGCTATACGCCAAATCCGACTTATCGGGAAGTGTGCTCCGGTGATACGGGTCATGCCGAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/2890004‑2889932‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcACACTTCCCGATAAGTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACG > minE/2889960‑2890024 GCTATACCGGCGGCTATACGCCAAATCCGACTTATCGGGAAGTGTGCTCCGGTGATACGGGTCATGCCGAA < 1:2181904/71‑1 TATACCGGCGGCTATACGCCAAATCCGACTTATCGGGAAGTGTGCTCCGGTGATACGGGTCATGCCGAAGC > 1:735956/1‑71 TATACGCCAAATCCGACTTATCGGGAAGTGTGCTCCGGTGATACGGGTCATGCCGAAG > 1:3197352/1‑58 TATACGCCAAATCCGACTTATCGGGAAGTGTGCTCCGGTGATACGGGTCATGCCGAAG > 1:321044/1‑58 TATACGCCAAATCCGACTTATCGGGAAGTGTGCTCCGGTGATACGGGTCATGCCGAAG > 1:54840/1‑58 TATACGCCAAATCCGACTTATCGGGAAGTGTGCTCCGGTGATACGGGTCATGCCGAA > 1:3674458/1‑57 TATACGCCAAATCCGACTTATCGGGAAGTGTGCTCCGGTGATACGGGTCATGCCGAA > 1:488890/1‑57 CGACTTATCGGGAAGTGTGCTCCGGTGATACGGGTCATGCCGAAGC > 1:611856/1‑46 GCTCCGGTGATTCGGGTCATGCCGAAGCACACTTCCCGATAAGTCGGATTT < 1:398979/51‑1 GCTCCGGTGATACGGGTCATGCCGAAGCACACTTCCCGATAAGTCGGATTT < 1:310488/51‑1 GCTCCGGTGATACGGGTCATGCCGAAGCACACTTCCCGATAAGTCGGATTT < 1:663221/51‑1 TCCGGTGATACGGGTCATGCCGAAGCACACTTCCCGATAAGTCGGATTTGG > 1:1624787/1‑51 TCCGGTGATACGGGTCATGCCGAAGCACACTTCCCGATAAGTCGGATTTGG > 1:674986/1‑51 CGGTGATACGGGTCATGCCGAAGCACACTTCCCGATAAGTCGGATTTGG > 1:1164547/1‑49 GTCATGCCGAAGCACACTTCCCGATAAGTCGGATTT < 1:512515/36‑1 CGAAGCACACTTCCCGATAAGTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACG < 1:517714/71‑1 GCTATACCGGCGGCTATACGCCAAATCCGACTTATCGGGAAGTGTGCTCCGGTGATACGGGTCATGCCGAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/2890004‑2889932‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcACACTTCCCGATAAGTCGGATTTGGCGTATAGCCGCCGGTATAGCCTGCGGCGGTGCTGTAAACG > minE/2889960‑2890024 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |