| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 1262733 = | 55 (0.930) | 4 (0.080) | 3/90 | NT | 6.8% | coding (450/747 nt) | cutC | copper homeostasis protein |
| ? | minE | 1262759 = | 61 (1.170) | coding (424/747 nt) | cutC | copper homeostasis protein | |||||
TAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAG > minE/1262663‑1262800 | acttttcatcgcgccttcgatatgtgcgctaaccctttatatacactcaataatcttgcggaattgggcat < 1:2111180‑M1/1‑1 (MQ=255)acttttcatcgcgccttcgatatgtgcgctaaccctttatatacactcaataatcttgcggaattgggcat < 1:2129482‑M1/1‑1 (MQ=255)acttttcatcgcgccttcgatatgtgcgctaaccctttatatacactcaataatcttgcggaattgggcat > 1:240244‑M1/71‑71 (MQ=255) ttttcatcgcgccttcgatatgtgcgctaaccctttatatacactcaataatcttgcggaattgggcaTTg < 1:3078222‑M1/3‑1 (MQ=255) aTGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTg < 1:760193/71‑1 (MQ=255) tGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGc < 1:2429938/71‑1 (MQ=255) ttcatcgcgccttcgatatgtgcgctaaccctttatatacactcaataatcttgcggaattgggcaTTGcc < 1:3679306‑M1/5‑1 (MQ=255) ttcatcgcgccttcgatatgtgcgctaaccctttatatacactcaataatcttgcggaattgggcaTTGc > 1:785931‑M1/67‑70 (MQ=255) gATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGAttttt < 1:807378/68‑1 (MQ=255) ttGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGAtttt > 1:1468514/1‑65 (MQ=255) catcgcgccttcgatatgtgcgctaaccctttatatacactcaataatcttgcggaattgggcaTTGccc > 1:2825761‑M1/65‑70 (MQ=255) catcgcgccttcgatatgtgcgctaaccctttatatacactcaataatcttgcggaattgggcaTTGccc > 1:2498182‑M1/65‑70 (MQ=255) gAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGAt < 1:141706/71‑1 (MQ=255) cATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTc < 1:1752876/71‑1 (MQ=255) cATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTc < 1:354203/71‑1 (MQ=255) tCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAg > 1:504316/1‑71 (MQ=255) tCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAg > 1:1553508/1‑71 (MQ=255) tatgtgcgctaaccctttatatacactcaataatcttgcggaattgggcaTTGCCCTGATGTCAGTACCCg < 1:2709244‑M1/21‑1 (MQ=255) gcgctaaccctttatatacactcaataatcttgcggaattgggcat < 1:2843187‑M1/1‑1 (MQ=255) gcgctaaccctttatatacactcaataatcttgcggaattgggcat < 1:3376478‑M1/1‑1 (MQ=255) aTAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTa > 1:2680367/1‑61 (MQ=255) aTAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTAc < 1:1911554/62‑1 (MQ=255) tAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGt < 1:1369871/55‑1 (MQ=255) gctaaccctttatatacactcaataatcttgcggaattgggcaTTGCCCTGATGTCAGTACCCGGGCAATg > 1:2819083‑M1/44‑71 (MQ=255) gctaaccctttatatacactcaataatcttgcggaattgggcaTTGCCCTGATGTCAGTACCCGGGCAATg > 1:702953‑M1/44‑71 (MQ=255) ctaaccctttatatacactcaataatcttgcggaattgggcaTTg < 1:1082500‑M1/3‑1 (MQ=255) ctaaccctttatatacactcaataatcttgcggaattgggcaTTGc < 1:577062‑M1/4‑1 (MQ=255) ctaaccctttatatacactcaataatcttgcggaattgggcaTTGc < 1:2978242‑M1/4‑1 (MQ=255) ctaaccctttatatacactcaataatcttgcgcaattgggcaTTGc > 1:3190507‑M1/43‑46 (MQ=255) aGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGc < 1:2116457/70‑1 (MQ=255) gTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGccc < 1:922437/71‑1 (MQ=255) tCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGc < 1:39719/62‑1 (MQ=255) cctttatatacactcaataatcttgcggaattgggcaTTGCCCTGATGTCAGTACCCGGGCa > 1:1675741‑M1/38‑62 (MQ=255) ccATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCaa < 1:73863/70‑1 (MQ=255) cATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTAc > 1:2790765/1‑54 (MQ=255) cATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAAtt < 1:3018583/71‑1 (MQ=255) aTAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATg < 1:2085907/46‑1 (MQ=255) aTAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATg < 1:815956/46‑1 (MQ=255) aTAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATg < 1:1237214/46‑1 (MQ=255) aTAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGt > 1:2560987/1‑51 (MQ=255) aTAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCa < 1:1301222/60‑1 (MQ=255) aTAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAAtt < 1:3187141/70‑1 (MQ=255) tAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTAccc > 1:1099954/1‑54 (MQ=255) tAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTcc > 1:2175871/1‑71 (MQ=255) tAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTcc > 1:2949772/1‑71 (MQ=255) aaTTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCg < 1:2206219/54‑1 (MQ=255) aaTTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCg > 1:3247507/1‑71 (MQ=255) aaTTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCg > 1:1967775/1‑71 (MQ=255) tGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATg > 1:2705498/1‑55 (MQ=255) tGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGa < 1:1805677/70‑1 (MQ=255) gATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGat > 1:2936485/1‑70 (MQ=255) aTAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTAcc < 1:656628/44‑1 (MQ=255) aTAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGatta < 1:1799263/71‑1 (MQ=255) tAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGattat > 1:2519178/1‑71 (MQ=255) tAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGattat > 1:486857/1‑71 (MQ=255) aaCCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGc < 1:1848858/61‑1 (MQ=255) ccTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATTCCCAATTCCGCAAGATTATTGAg < 1:1815460/71‑1 (MQ=255) cTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGattatt < 1:1720693/67‑1 (MQ=255) cTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAgt < 1:1393694/71‑1 (MQ=255) ttGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCTCAAGATTATTGa > 1:1953734/1‑68 (MQ=255) ttGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGa > 1:1238880/1‑68 (MQ=255) ttGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAgtg > 1:1526154/1‑71 (MQ=255) ttGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAg > 1:3076590/1‑69 (MQ=255) gTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGtata > 1:2347437/1‑70 (MQ=255) tGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAAt > 1:2449790/1‑46 (MQ=255) tGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAAt > 1:3696597/1‑46 (MQ=255) tGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAAt > 1:754628/1‑46 (MQ=255) tGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGtatata < 1:649954/71‑1 (MQ=255) gCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAAtt > 1:1204022/1‑46 (MQ=255) gCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGtatata > 1:1658404/1‑70 (MQ=255) gCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGtatata > 1:1331316/1‑70 (MQ=255) gCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGtatata > 1:1186457/1‑70 (MQ=255) cGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCTATTCCGCAAGATTATTGAGTGTATATaa < 1:928678/70‑1 (MQ=255) cGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATaa < 1:1356888/70‑1 (MQ=255) cGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATaa < 1:1211582/70‑1 (MQ=255) tGATTTTTGCCCTGATGTGAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGa > 1:2851138/1‑56 (MQ=255) tGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGa > 1:3427039/1‑56 (MQ=255) aTTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGtt < 1:3373714/70‑1 (MQ=255) aTTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGt < 1:2550809/69‑1 (MQ=255) aTTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGt < 1:2435006/69‑1 (MQ=255) aTTTTTGCCCTGATGGCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGt < 1:2776231/69‑1 (MQ=255) tttttGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAg < 1:1838069/71‑1 (MQ=255) | TAATGATTGGAGCATCACGATGGGCAATAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAG > minE/1262663‑1262800 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |