| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 1262733 = | 55 (0.930) | 4 (0.080) | 3/90 | NT | 6.8% | coding (450/747 nt) | cutC | copper homeostasis protein |
| ? | minE | 1262759 = | 61 (1.170) | coding (424/747 nt) | cutC | copper homeostasis protein | |||||
TAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCGAAGGCGCGATGAAAAGTC > minE/1262690‑1262829 | gctaaccctttatatacactcaataatcttgcggaattgggcaTTGCCCTGATGTCAGTACCCGGGCAATg > 1:702953‑M1/44‑71 (MQ=255)gctaaccctttatatacactcaataatcttgcggaattgggcaTTGCCCTGATGTCAGTACCCGGGCAATg > 1:2819083‑M1/44‑71 (MQ=255) aGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGc < 1:2116457/70‑1 (MQ=255) gTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGccc < 1:922437/71‑1 (MQ=255) ccATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCaa < 1:73863/70‑1 (MQ=255) cATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAAtt < 1:3018583/71‑1 (MQ=255) aTAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAAtt < 1:3187141/70‑1 (MQ=255) tAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTcc > 1:2949772/1‑71 (MQ=255) tAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTcc > 1:2175871/1‑71 (MQ=255) aaTTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCg > 1:3247507/1‑71 (MQ=255) aaTTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCg > 1:1967775/1‑71 (MQ=255) tGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATg > 1:2705498/1‑55 (MQ=255) tGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGa < 1:1805677/70‑1 (MQ=255) gATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGat > 1:2936485/1‑70 (MQ=255) aTAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGatta < 1:1799263/71‑1 (MQ=255) tAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGattat > 1:2519178/1‑71 (MQ=255) tAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGattat > 1:486857/1‑71 (MQ=255) aaCCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGc < 1:1848858/61‑1 (MQ=255) ccTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATTCCCAATTCCGCAAGATTATTGAg < 1:1815460/71‑1 (MQ=255) cTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGattatt < 1:1720693/67‑1 (MQ=255) cTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAgt < 1:1393694/71‑1 (MQ=255) ttGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCTCAAGATTATTGa > 1:1953734/1‑68 (MQ=255) ttGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGa > 1:1238880/1‑68 (MQ=255) ttGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAgtg > 1:1526154/1‑71 (MQ=255) ttGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAg > 1:3076590/1‑69 (MQ=255) gTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGtata > 1:2347437/1‑70 (MQ=255) tGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAAt > 1:2449790/1‑46 (MQ=255) tGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAAt > 1:754628/1‑46 (MQ=255) tGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAAt > 1:3696597/1‑46 (MQ=255) tGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGtatata < 1:649954/71‑1 (MQ=255) gCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAAtt > 1:1204022/1‑46 (MQ=255) gCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGtatata > 1:1658404/1‑70 (MQ=255) gCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGtatata > 1:1331316/1‑70 (MQ=255) gCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGtatata > 1:1186457/1‑70 (MQ=255) cGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCTATTCCGCAAGATTATTGAGTGTATATaa < 1:928678/70‑1 (MQ=255) cGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATaa < 1:1356888/70‑1 (MQ=255) cGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATaa < 1:1211582/70‑1 (MQ=255) tGATTTTTGCCCTGATGTGAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGa > 1:2851138/1‑56 (MQ=255) tGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGa > 1:3427039/1‑56 (MQ=255) aTTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGtt < 1:3373714/70‑1 (MQ=255) aTTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGt < 1:2435006/69‑1 (MQ=255) aTTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGt < 1:2550809/69‑1 (MQ=255) aTTTTTGCCCTGATGGCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGt < 1:2776231/69‑1 (MQ=255) tttttGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAg < 1:1838069/71‑1 (MQ=255) cattgcccgggtactgacatcagggcaaTGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAgc > 1:2819083‑M2/29‑71 (MQ=255) cattgcccgggtactgacatcagggcaaTGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAgc > 1:702953‑M2/29‑71 (MQ=255) tgcccgggtactgacatcagggcaaTGCCCAATTCCGCAAGATTATTGAGTGTATATAAAgg > 1:1675741‑M2/26‑62 (MQ=255) TGCCCTGATGTCAGTACCCGGGCAATGCC‑AATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAg < 1:3054000‑M1/66‑1 (MQ=255) GCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAgt > 1:2502651‑M1/1‑50 (MQ=255) CCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGcaca > 1:37965‑M1/1‑71 (MQ=255) cgggtactgacatcagggcaaTGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACata < 1:2709244‑M2/50‑1 (MQ=255) CTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACata < 1:3428557‑M1/71‑1 (MQ=255) CTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACata < 1:3543443‑M1/71‑1 (MQ=255) tGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAg > 1:3275816/1‑36 (MQ=255) tGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGa < 1:3187002/44‑1 (MQ=255) tGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACatat > 1:2757993/1‑71 (MQ=255) tGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACatat > 1:1170766/1‑71 (MQ=255) tGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACatat > 1:1278298/1‑71 (MQ=255) tGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACatat > 1:3065864/1‑71 (MQ=255) gATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGa > 1:1299656/1‑43 (MQ=255) gATGTCAGTACCCGGGAAATGCGCAATTCCGCAAGATTATTGa > 1:1121924/1‑43 (MQ=38) aTGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATc > 1:2538243/1‑70 (MQ=255) aTGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCg < 1:1615347/71‑1 (MQ=255) tGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCg > 1:3276800/1‑70 (MQ=255) gTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTAATGAGTGTATATAAAGGGTTAGCGCACATATCg > 1:1937774/1‑69 (MQ=255) cAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAgt > 1:495510/1‑40 (MQ=255) cAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAgt > 1:1486792/1‑40 (MQ=255) cAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAgt > 1:1351825/1‑40 (MQ=255) cAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAgt > 1:3609618/1‑40 (MQ=255) aGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAgtgt > 1:1097413/1‑41 (MQ=255) aGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAgtg < 1:2773511/40‑1 (MQ=255) aGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAgtg < 1:2895752/40‑1 (MQ=255) aGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAgtg < 1:899560/40‑1 (MQ=255) gTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAgtg < 1:1326922/39‑1 (MQ=255) gTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAgtg < 1:1034210/39‑1 (MQ=255) cccGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCGAAGGcgcg < 1:684708/70‑1 (MQ=255) cccGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCGAAGGCGCGa > 1:1621766/1‑71 (MQ=255) cccGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCGAAGGCGCGa > 1:1354273/1‑71 (MQ=255) cGGGCAATGCCCAATTCCGCAAGATTATTGAGTGtatat < 1:229904/39‑1 (MQ=255) gggcaaTGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCGAAGGCGCGATg > 1:2825761‑M2/7‑70 (MQ=255) gggcaaTGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCGAAGGCGCGATg > 1:2498182‑M2/7‑70 (MQ=255) ggcaaTGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCGAAGGCGCGATGaa < 1:3679306‑M2/66‑1 (MQ=255) gcaaTGCCCAATTGCGCAAGATTATTGAGTGTATATAAAGGGTTAg > 1:3190507‑M2/5‑46 (MQ=255) gcaaTGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAg < 1:2978242‑M2/42‑1 (MQ=255) gcaaTGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAg < 1:577062‑M2/42‑1 (MQ=255) gcaaTGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCGAAGGCGCGATGaa > 1:785931‑M2/5‑70 (MQ=255) caaTGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAg < 1:1082500‑M2/42‑1 (MQ=255) caaTGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCGAAGGCGCGATGaaaa < 1:3078222‑M2/68‑1 (MQ=255) aTGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAgcgc < 1:3376478‑M2/45‑1 (MQ=255) aTGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAgcgc < 1:2843187‑M2/45‑1 (MQ=255) aTGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCGAAGGCGCGATGAAAAGt > 1:240244‑M2/2‑71 (MQ=255) aTGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCGAAGGCGCGATGAAAAGt < 1:2129482‑M2/70‑1 (MQ=255) aTGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCGAAGGCGCGATGAAAAGt < 1:2111180‑M2/70‑1 (MQ=255) tGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCGAAGGCGCGATGAAAAGt > 1:704503/1‑70 (MQ=255) tGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCGAAGGCGCGATGAAAAGt > 1:1254907/1‑70 (MQ=255) tGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCGAAGGCGCGATGAAAAGTc < 1:1861070/71‑1 (MQ=255) tGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCGAAGGCGCGATGAAAAGTc < 1:928773/71‑1 (MQ=255) | TAAGTTCCATAATTTTTGATAAACCTTGCAGTGCGTCTGATTTTTGCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCGAAGGCGCGATGAAAAGTC > minE/1262690‑1262829 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |