BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	minE	= 1072805	89 (1.510)	7 (0.130)	3/92	NT	7.5%	coding (1014/1257 nt)	ydhQ	conserved hypothetical protein
*	?	minE	= 1072846	92 (1.730)	7 (0.130)	3/92	NT	7.5%	coding (973/1257 nt)	ydhQ	conserved hypothetical protein

Only 100 of 138 total aligned reads displayed.

TGCGTTGCCGCATCAGTGATCAGCCACAGTTTTCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTCTAGAATCAACACACCGCCCTGCTGTACAGTAATCGTTGATTGT  >  minE/1072776‑1072916

tGCGTTGCCGCATCAGTGATCAGCCACAGTTTTCCACCATTCAGATTGATGTTACCAACAATGACAGTGac                                                                        <  1:1423/71‑1 (MQ=255)

 gCGTTGCCGCATCAGTGATCAGCCACAGTTTTCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACa                                                                       <  1:262323‑M2/71‑2 (MQ=255)

  cGTTGCCGCATCAGTGATCAGCCACAGTTTTCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACa                                                                       >  1:3175413‑M2/1‑69 (MQ=255)

  cGTTGCCGCATCAGTGATCAGCCACAGTTTTCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACa                                                                       >  1:443826‑M2/1‑69 (MQ=255)

  cGTTGCCGCATCAGTGATCAGCCACAGTTTTCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACa                                                                       >  1:2493119‑M2/1‑69 (MQ=255)

   gTTGCCGCATCAGTGATCAGCCACAGTTTTCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACact                                                                     <  1:2893906‑M2/71‑4 (MQ=255)

    ttGCCGCATCAGTGATCAGCCACAGTTTTCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACactg                                                                    >  1:2641646‑M2/1‑67 (MQ=255)

      gCCGCATCAGTGATCAGCCACAGTTTTCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACactgt                                                                   <  1:1795080‑M2/70‑6 (MQ=255)

        cGCATCAGTGATCAGCCACAGTTTTCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACACTGTc                                                                  <  1:1296643/69‑1 (MQ=255)

        cGCATCAGTGATCAGCCACAGTTTTCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACACTGTc                                                                  <  1:3375356/69‑1 (MQ=255)

          cATCAGTGATCAGCCACAGTTTTCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACACTGTCAc                                                                >  1:1745366/1‑69 (MQ=255)

          cATCAGTGATCAGCCACAGTTTTCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACACTGTCAc                                                                >  1:1741071/1‑69 (MQ=255)

          cATCAGTGATCAGCCACAGTTTTCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACACTGTCAc                                                                >  1:2934279/1‑69 (MQ=255)

            tCAGTGATCAGCCACAGTTTTCCACGATTCAGATTGATGTAACCAACAATGAAAGTGACACTGTCACCtat                                                            >  1:655562/1‑69 (MQ=255)

            tCAGTGATCAGCCACAGTTTTCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACACTGTCACCttt                                                            <  1:337256/71‑1 (MQ=255)

              aGTGATCAGCCACAGTTTTCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACACTGTCACCtttt                                                           <  1:1581607/70‑1 (MQ=255)

              aGTGATCAGCCACAGTTTTCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACACTGTCACCTTTTa                                                          >  1:2887670/1‑71 (MQ=255)

                   tCAGCCACAGTTTTCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACACTGTCACCTTTTACCGTa                                                     <  1:1329044/71‑1 (MQ=255)

                   tCAGCCACAGTTTTCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACACTGTCACCTTTTACCGTa                                                     >  1:2303410/1‑71 (MQ=255)

                   tCAGCCACAGTTTTCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACACTGTCACCTTTTACCGTa                                                     <  1:879608/71‑1 (MQ=255)

                    cAGCCACAGTTTTCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACACTGTCACCTTTTACCGTAc                                                    >  1:2266013/1‑71 (MQ=255)

                     aGCCACAGTTTTCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACACTGTCACCTTTTACCGTACt                                                   >  1:798382/1‑71 (MQ=255)

                        cacaGTTTTCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACACTGTCACCttt                                                            <  1:1560088/59‑1 (MQ=255)

                        cacaGTTTTCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACACTGTCACCttt                                                            <  1:3116798/59‑1 (MQ=255)

                        cacaGTTTTCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACACTGTCACCTTTTACCGTACTGcc                                                <  1:710802/71‑1 (MQ=255)

                         acaGTTTTCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACACTGTCACCTTTTACCGTACTGCCg                                               >  1:1079552/1‑71 (MQ=255)

                          caGTTTTCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACACTGTCACCTTTTACCGTACTGCCg                                               >  1:3006984/1‑70 (MQ=255)

                          caGTTTTCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACACTGTCACCTTTTACCGTACTGCCGt                                              >  1:2290374/1‑71 (MQ=255)

                           aGTTTTCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACactgtggctgatcactgatgcggcaac                                             <  1:875280‑M2/71‑28 (MQ=255)

                           aGTTTTCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACACTGTCACCTTTTa                                                          <  1:3067318/58‑1 (MQ=255)

                           aGTTTTCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACACTGTCACCTTTTa                                                          <  1:3361605/58‑1 (MQ=255)

                           aGTTTTCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTc                                             >  1:1041834/1‑71 (MQ=255)

                           aGTTTTCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTc                                             >  1:3730741/1‑71 (MQ=255)

                           aGTTTTCCACCATTCAGATTGATGTTACCAAC‑‑‑GAAAGTGACACTGTCACCTTTTACCGTACTGCCGTCTAg                                          <  1:1397136/71‑1 (MQ=255)

                            gTTTTCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACACTGTCAc                                                                <  1:3295042/51‑1 (MQ=255)

                            gTTTTCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTc                                             >  1:2406711/1‑70 (MQ=255)

                             ttttCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACACTGTCACCt                                                              <  1:2779928/52‑1 (MQ=255)

                             ttttCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACACTGTCACCt                                                              <  1:155953/52‑1 (MQ=255)

                             ttttCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTCTa                                           <  1:1357187/71‑1 (MQ=255)

                             ttttCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTCTa                                           <  1:2731054/71‑1 (MQ=255)

                               ttCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTCTAg                                          <  1:1626928/70‑1 (MQ=255)

                                tCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACactgtggctgatcactgatgcggcaacgcat                                         >  1:1251973‑M2/1‑39 (MQ=255)

                                 cgaccaTTCAGATTGATGTTACCAACAATGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTCTAGa                                         >  1:1832969/3‑69 (MQ=255)

                                 ccaccaTTCAGATTGATGTTACCAACAATGAAAGTGACactgtggctgatcactgatgcggcaacgcatg                                        >  1:2888272‑M2/1‑38 (MQ=255)

                                 ccaccaTTCAGATTGATGTTACCAACAATGAAAGTGACactgtggctgatcactgatgcggcaacgcatg                                        >  1:47100‑M2/1‑38 (MQ=255)

                                 ccaccaTTCAGATTGATGTTACCAACAATGAAAGTGACactgtggctgatcactgatgcggcaacgcatg                                        >  1:2385814‑M2/1‑38 (MQ=255)

                                 ccaccaTTCAGATTGATGTTACCAACAATGAAAGTGACactgtggctgatcactgatgcggcaacgcatg                                        >  1:2140132‑M2/1‑38 (MQ=255)

                                   accaTTCAGATTGATGTTACCAACAATGAAAGTGACACTGTc                                                                  <  1:3528287/42‑1 (MQ=255)

                                     caTTCAGATTGATGTTACCAACAATGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTCTAGAATCaa                                    >  1:668725/1‑70 (MQ=255)

                                     caTTCAGATTGATGTTACCAACAATGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTCTAGAATCaa                                    >  1:244421/1‑70 (MQ=255)

                                     caTTCAGATTGATGTTACCAACAATGAAAGTGACACTGTCACCTTTTACAGTACTGCCGTCTAGAATCaa                                    >  1:1607120/1‑70 (MQ=255)

                                         cAGATTGATGTTACCAACAATGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTCTAGAATCAacacac                               >  1:105038/1‑71 (MQ=255)

                                         cAGATTGATGTTACCAACAATGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTCTAGAATCAacacac                               >  1:1544986/1‑71 (MQ=255)

                                          tcaTTGTTGGTAACATCAATGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTCTAGAATCAACACAcc                              >  1:218992/3‑71 (MQ=38)

                                          aGATTGATGTTACCAACAATGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTCTAGAATc                                      <  1:963156/63‑1 (MQ=255)

                                          aGATTGATGTTACCAACAATGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTCTAGAATc                                      <  1:3393704/63‑1 (MQ=255)

                                          aGATTGATGTTACCAACAATGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTCTAGAATCAACACAcc                              >  1:1958080/1‑71 (MQ=255)

                                           gATTGATGTTACCAACAATGAAAGTGACACTGTCACCTTTTa                                                          <  1:661935/42‑1 (MQ=255)

                                           gATTGATGTTACCAACAATGAAAGTGACACTGTCACCTTTTa                                                          <  1:3707847/42‑1 (MQ=255)

                                           gATTGATGTTACCAACAATGAAAGTGACACTGTCACCTTTTa                                                          <  1:3527114/42‑1 (MQ=255)

                                            aTTGATGTTACCAACAATGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTCTAGAATc                                      >  1:1123189/1‑61 (MQ=255)

                                            aTTGATGTTACCAACAATGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTCTAGAATc                                      >  1:3239826/1‑61 (MQ=255)

                                              tGATGTTACCAACAATGAAAGTGACACTGTCACCt                                                              >  1:1402697/1‑35 (MQ=255)

                                              tGATGTTACCAACAATGAAAGTGACACTGTCACCt                                                              >  1:1476529/1‑35 (MQ=255)

                                              tGATGTTACCAACAATGAAAGTGACACTGTCACCt                                                              >  1:2848983/1‑35 (MQ=255)

                                              tGATGTTACCAACAATGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTCTAGAATCAACACACCGcc                           >  1:3623558/1‑70 (MQ=255)

                                              tGATGTTACCAACAATGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTCTAGAATCAACACACCGcc                           >  1:766602/1‑70 (MQ=255)

                                              tGATGTTACCAACAATGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTCTAGAATCAACACACCGcc                           >  1:3722781/1‑70 (MQ=255)

                                                aTGTTACCAACAATGAAAGTGACACTGTCACCTTTTACCGTACTGCCGt                                              <  1:2714717/49‑1 (MQ=255)

                                                  gTTACCAACAATGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTCTAGAATCAGCACACCGCCctgct                      >  1:1115561/1‑71 (MQ=255)

                                                  gTTACCAACAATGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTCTAGAATCAACACACCGCCctgct                      >  1:460402/1‑71 (MQ=255)

                                                  gTTACCAACAATGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTCTAGAATCAACACACCGCCctgct                      >  1:172366/1‑71 (MQ=255)

                                                   ttACCAACAATGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTCTAGaa                                        <  1:2732879/52‑1 (MQ=255)

                                                   ttACCAACAATGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTCTAGaa                                        <  1:3059417/52‑1 (MQ=255)

                                                     aCCAACAATGAAAGTGACactgtggctgatcactgatgcggcaacgcat                                         >  1:3680918‑M2/1‑18 (MQ=255)

                                                     aCCAACAATGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTCTAGAATCAACACACCGCCCTGCTGTa                   >  1:3623017/1‑71 (MQ=255)

                                                     aCCAACAATGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTCTAGAATCAACACACCGCCCTGCTGTa                   >  1:3195552/1‑71 (MQ=255)

                                                     aCCAACAATGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTCTAGAATCAACACACCGCCCTGCTGTa                   >  1:1693577/1‑71 (MQ=255)

                                                        aacaaTGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTCTAGAATCAACACACCGCCCTGCTGTACAg                <  1:3637022/71‑1 (MQ=255)

                                                         acaaTGAAAGTGACACTGTCACCTTTTACCGTACTGCCGt                                              >  1:2208964/1‑40 (MQ=255)

                                                         acaaTGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTCTAGAATCAACACACCGCCCTGCTGTACa                 >  1:627494/1‑69 (MQ=255)

                                                         acaaTGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTCTAGAATCAACACACCGCCCTGCTGTACa                 >  1:1114746/1‑69 (MQ=255)

                                                         acaaTGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTCTAGAATCAACACACCGCCCTGCTGTACa                 >  1:9511/1‑69 (MQ=255)

                                                          caaTGAAAGTGACACTGTCACCTTTTACCGTACTGCCg                                               >  1:121476/1‑38 (MQ=255)

                                                          caaTGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTCTAGAATCAACACACCGCCCTGCTGTACAGt               >  1:292702/1‑70 (MQ=255)

                                                          caaTGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTCTAGAATCAACACACCGCCCTGCTGTACAGt               >  1:2386355/1‑70 (MQ=255)

                                                          caaTGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTCTAGAATCAACACACCGCCCTGCTGTACAGTa              <  1:3009350/71‑1 (MQ=255)

                                                           aaTGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTCTAGAATCAACACACCGCCCTGCTGTACAGTaa             <  1:3028738/71‑1 (MQ=255)

                                                               aaaGTGACACTGTCACCTTTTACCGTACTGCCGTCTAGAATCAACACACCGCCCTGCTGTACAGTAATCg          <  1:75814/70‑1 (MQ=255)

                                                               aaaGTGACACTGTCACCTTTTACCGTACTGCCGTCTAGAATCAACACACCGCCCTGCTGTACAGTAATCGt         >  1:3612788/1‑71 (MQ=255)

                                                                aaGTGACACTGTCACCTTTTACCGTACTGCCTTCTATAATCAACACACCGCCCTGCTGTACAGTAATCGtt        <  1:526766/71‑1 (MQ=255)

                                                                aaGTGACACTGTCACCTTTTACCGTACTGCCGTCTAGAATCAACACACCGCCCTGCTGTACAGTAATCGtt        <  1:3154480/71‑1 (MQ=255)

                                                                aaGTGACACTGTCACCTTTTACCGTACTGCCGTCTAGAATCAACACACCGCCCTGCTGTACAGTAATCGtt        <  1:2145275/71‑1 (MQ=255)

                                                                  gTGACACTGTCACCTTTTACCGTACTGCCGTCTAGAATCAACACACCGCCCTGCTGTACAGTAATCGTTGa      >  1:1376673/1‑71 (MQ=255)

                                                                  gTGACACTGTCACCTTTTACCGTACTGCCGTCTAGAATCAACACACCGCCCTGCTGTACAGTAATCGTTGa      >  1:791050/1‑71 (MQ=255)

                                                                   tGACACTGTCACCTTTTACCGTACTGCCGTCTAGAATCAACACACCGCCCTGCTGTACAGTAATCGTTg       >  1:3284000/1‑69 (MQ=255)

                                                                     acacTGTCACCTTTTACCGTACTGCCGTCTAGAATCaa                                    <  1:3081411/38‑1 (MQ=255)

                                                                     acacTGTCACCTTTTACCGTACTGCCGTCTAGAATCaa                                    <  1:873781/38‑1 (MQ=255)

                                                                     acacTGTCACCTTTTACCGTACTGCCGTCTAGAATCAACACACCGCCCTGCTGTACAGTAATCGTTGAttg   >  1:2475597/1‑71 (MQ=255)

                                                                     acacTGTCACCTTTTACCGTACTGCCGTCTAGAATCAACACACCGCCCTGCTGTACAGTAATCGTTGAttg   <  1:1860601/71‑1 (MQ=255)

TGCGTTGCCGCATCAGTGATCAGCCACAGTTTTCCACCATTCAGATTGATGTTACCAACAATGAAAGTGACACTGTCACCTTTTACCGTACTGCCGTCTAGAATCAACACACCGCCCTGCTGTACAGTAATCGTTGATTGT  >  minE/1072776‑1072916

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.