Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1317602	1317625	24	28 [1]	[0] 27	cld	regulator of length of O‑antigen component of lipopolysaccharide chains

CCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTAC  >  minE/1317540‑1317602                                                              |  ccGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTa   >  1:2611307/1‑62 (MQ=255) ccGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTa   >  1:592161/1‑62 (MQ=255) ccGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTa   >  1:500113/1‑62 (MQ=255) ccGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTa   >  1:3575482/1‑62 (MQ=255) ccGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTa   >  1:3520948/1‑62 (MQ=255) ccGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTa   >  1:3208829/1‑62 (MQ=255) ccGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTa   >  1:3151238/1‑62 (MQ=255) ccGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTa   >  1:3137385/1‑62 (MQ=255) ccGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTa   >  1:2998466/1‑62 (MQ=255) ccGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTa   >  1:2964717/1‑62 (MQ=255) ccGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTa   >  1:2926024/1‑62 (MQ=255) ccGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTa   >  1:2777792/1‑62 (MQ=255) ccGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTa   >  1:1162822/1‑62 (MQ=255) ccGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTa   >  1:2564963/1‑62 (MQ=255) ccGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTa   >  1:242913/1‑62 (MQ=255) ccGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTa   >  1:2339162/1‑62 (MQ=255) ccGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTa   >  1:2267720/1‑62 (MQ=255) ccGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTa   >  1:203565/1‑62 (MQ=255) ccGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTa   >  1:1924028/1‑62 (MQ=255) ccGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTa   >  1:1559093/1‑62 (MQ=255) ccGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTa   >  1:1481396/1‑62 (MQ=255) ccGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTa   >  1:143906/1‑62 (MQ=255) ccGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTa   >  1:126523/1‑62 (MQ=255) ccGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTa   >  1:1244362/1‑62 (MQ=255) ccGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTa   >  1:1223849/1‑62 (MQ=255) ccGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTa   >  1:1186654/1‑62 (MQ=255) ccGGCAAAAAAACGGGCAAGGTGGCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTa   >  1:3330285/1‑62 (MQ=255) ccGGC‑AAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTAc  >  1:3038642/1‑62 (MQ=255)                                                              |  CCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTAC  >  minE/1317540‑1317602

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑