Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1446625	1446632	8	41 [0]	[0] 52	rcsC	hybrid sensory kinase in two‑component regulatory system with RcsB and YojN

TTCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCG  >  minE/1446586‑1446624                                       | ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:3250203/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:249212/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:250715/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:2636632/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:2667176/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:2891938/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:2997767/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:3010775/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:3051039/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:3087927/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:3138967/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:2423511/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:3425813/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:3576805/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:3618214/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:412919/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:444409/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:517692/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:632140/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:674610/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:936706/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:1826697/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:1237959/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:1248207/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:1284000/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:1314155/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:1445781/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:1651273/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:1743723/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:1773855/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:1819776/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:1181299/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:1846299/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:2123371/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:218352/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:2191642/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:2299813/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:2304033/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:2383950/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCg  >  1:2419374/1‑39 (MQ=255) ttCCGTATAGCCAAACCAGGAGCGTTACTGCATCCAGCg  >  1:1834821/1‑39 (MQ=255)                                       | TTCCGTATAGCCAAACCAGGAGCGTTCCTGCATCCAGCG  >  minE/1446586‑1446624

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑