Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1557720	1557759	40	55 [0]	[0] 53	emrY	predicted multidrug efflux system

CGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTC  >  minE/1557679‑1557719                                         | cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:3451522/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:274467/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:2824276/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:2886259/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:2907041/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:302866/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:3096625/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:3116364/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:32248/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:3234578/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:3268879/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:3284240/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:3401126/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:3442472/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:2695786/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:3505058/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:3598229/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:3635997/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:3638205/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:371521/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:511748/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:522729/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:522962/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:554953/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:585290/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:673002/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:855788/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:951395/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:2052293/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:1194068/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:1360223/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:1433769/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:1447639/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:1595708/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:1632728/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:1666151/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:168637/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:1855362/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:1947933/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:1948797/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:1952471/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:2029223/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:111975/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:2075168/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:2095981/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:2112625/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:2266686/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:2308870/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:2323968/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:2354547/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:2360272/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:236831/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:2398390/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:2496926/1‑41 (MQ=255) cGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTc  >  1:2532782/1‑41 (MQ=255)                                         | CGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTC  >  minE/1557679‑1557719

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑