Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2544051	2544085	35	56 [1]	[0] 36	rfaL	O‑antigen ligase

CAGCAATTAGAAATGACAGAGAATACAAAGTGTATAATACACTCTCTTTTTT  >  minE/2544086‑2544137 |                                                    cAGCAATTAGAAATGACAGAGAATACAAAGTGTATAATACACTCTCtttttt  <  1:3549397/52‑1 (MQ=255) cAGCAATTAGAAATGACAGAGAATACAAAGTGTATAATACACTCTCtttttt  <  1:2648439/52‑1 (MQ=255) cAGCAATTAGAAATGACAGAGAATACAAAGTGTATAATACACTCTCtttttt  <  1:2838340/52‑1 (MQ=255) cAGCAATTAGAAATGACAGAGAATACAAAGTGTATAATACACTCTCtttttt  <  1:2989399/52‑1 (MQ=255) cAGCAATTAGAAATGACAGAGAATACAAAGTGTATAATACACTCTCtttttt  <  1:3085341/52‑1 (MQ=255) cAGCAATTAGAAATGACAGAGAATACAAAGTGTATAATACACTCTCtttttt  <  1:3087391/52‑1 (MQ=255) cAGCAATTAGAAATGACAGAGAATACAAAGTGTATAATACACTCTCtttttt  <  1:3292009/52‑1 (MQ=255) cAGCAATTAGAAATGACAGAGAATACAAAGTGTATAATACACTCTCtttttt  <  1:3295263/52‑1 (MQ=255) cAGCAATTAGAAATGACAGAGAATACAAAGTGTATAATACACTCTCtttttt  <  1:353494/52‑1 (MQ=255) cAGCAATTAGAAATGACAGAGAATACAAAGTGTATAATACACTCTCtttttt  <  1:263976/52‑1 (MQ=255) cAGCAATTAGAAATGACAGAGAATACAAAGTGTATAATACACTCTCtttttt  <  1:402364/52‑1 (MQ=255) cAGCAATTAGAAATGACAGAGAATACAAAGTGTATAATACACTCTCtttttt  <  1:409440/52‑1 (MQ=255) cAGCAATTAGAAATGACAGAGAATACAAAGTGTATAATACACTCTCtttttt  <  1:47917/52‑1 (MQ=255) cAGCAATTAGAAATGACAGAGAATACAAAGTGTATAATACACTCTCtttttt  <  1:652931/52‑1 (MQ=255) cAGCAATTAGAAATGACAGAGAATACAAAGTGTATAATACACTCTCtttttt  <  1:7067/52‑1 (MQ=255) cAGCAATTAGAAATGACAGAGAATACAAAGTGTATAATACACTCTCtttttt  <  1:894058/52‑1 (MQ=255) cAGCAATTAGAAATGACAGAGAATACAAAGTGTATAATACACTCTCtttttt  <  1:954458/52‑1 (MQ=255) cAGCAATTAGAAATGACAGAGAATACAAAGTGTATAATACACTCTCtttttt  <  1:992556/52‑1 (MQ=255) cAGCAATTAGAAATGACAGAGAATACAAAGTGTATAATACACTCTCtttttt  <  1:2049355/52‑1 (MQ=255) cAGCAATTAGAAATGACAGAGAATACAAAGTGTATAATACACTCTCtttttt  <  1:1096795/52‑1 (MQ=255) cAGCAATTAGAAATGACAGAGAATACAAAGTGTATAATACACTCTCtttttt  <  1:117961/52‑1 (MQ=255) cAGCAATTAGAAATGACAGAGAATACAAAGTGTATAATACACTCTCtttttt  <  1:1540955/52‑1 (MQ=255) cAGCAATTAGAAATGACAGAGAATACAAAGTGTATAATACACTCTCtttttt  <  1:1631062/52‑1 (MQ=255) cAGCAATTAGAAATGACAGAGAATACAAAGTGTATAATACACTCTCtttttt  <  1:1697320/52‑1 (MQ=255) cAGCAATTAGAAATGACAGAGAATACAAAGTGTATAATACACTCTCtttttt  <  1:1827179/52‑1 (MQ=255) cAGCAATTAGAAATGACAGAGAATACAAAGTGTATAATACACTCTCtttttt  <  1:1832364/52‑1 (MQ=255) cAGCAATTAGAAATGACAGAGAATACAAAGTGTATAATACACTCTCtttttt  <  1:1976621/52‑1 (MQ=255) cAGCAATTAGAAATGACAGAGAATACAAAGTGTATAATACACTCTCtttttt  <  1:101047/52‑1 (MQ=255) cAGCAATTAGAAATGACAGAGAATACAAAGTGTATAATACACTCTCtttttt  <  1:2116811/52‑1 (MQ=255) cAGCAATTAGAAATGACAGAGAATACAAAGTGTATAATACACTCTCtttttt  <  1:2132674/52‑1 (MQ=255) cAGCAATTAGAAATGACAGAGAATACAAAGTGTATAATACACTCTCtttttt  <  1:2215294/52‑1 (MQ=255) cAGCAATTAGAAATGACAGAGAATACAAAGTGTATAATACACTCTCtttttt  <  1:243769/52‑1 (MQ=255) cAGCAATTAGAAATGACAGAGAATACAAAGTGTATAATACACTCTCtttttt  <  1:2487987/52‑1 (MQ=255) cAGCAATTAGAAATGACAGAGAATACAAAGTGTATAATACACTCTCtttttt  <  1:2492158/52‑1 (MQ=255) cAGCAATTAGAAATGACAGAGAATACAAAGTGTATAATACACTCTCtttttt  <  1:2512305/52‑1 (MQ=255) cAGCAATTAGAAATGACAGAGAATAAAAAGTGTATAATACACTCTCtttttt  <  1:2232542/52‑1 (MQ=255) |                                                    CAGCAATTAGAAATGACAGAGAATACAAAGTGTATAATACACTCTCTTTTTT  >  minE/2544086‑2544137

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑