Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1123073	1123126	54	44 [0]	[0] 36	ihfA	integration host factor (IHF), DNA‑binding protein, alpha subunit

TTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTG  >  minE/1123127‑1123187 |                                                             ttCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTgg             >  1:569443/1‑50 (MQ=255) ttCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCt    >  1:579462/1‑59 (MQ=255) ttCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTg  >  1:3418041/1‑61 (MQ=255) ttCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTg  >  1:3043451/1‑61 (MQ=255) ttCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTg  >  1:3067155/1‑61 (MQ=255) ttCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTg  >  1:3164778/1‑61 (MQ=255) ttCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTg  >  1:3180447/1‑61 (MQ=255) ttCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTg  >  1:3223016/1‑61 (MQ=255) ttCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTg  >  1:3295906/1‑61 (MQ=255) ttCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTg  >  1:3311584/1‑61 (MQ=255) ttCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTg  >  1:3317704/1‑61 (MQ=255) ttCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTg  >  1:2974098/1‑61 (MQ=255) ttCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTg  >  1:381737/1‑61 (MQ=255) ttCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTg  >  1:418293/1‑61 (MQ=255) ttCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTg  >  1:485723/1‑61 (MQ=255) ttCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTg  >  1:526771/1‑61 (MQ=255) ttCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTg  >  1:575629/1‑61 (MQ=255) ttCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTg  >  1:957368/1‑61 (MQ=255) ttCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTg  >  1:1913912/1‑61 (MQ=255) ttCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTg  >  1:117066/1‑61 (MQ=255) ttCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTg  >  1:1212380/1‑61 (MQ=255) ttCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTg  >  1:1309858/1‑61 (MQ=255) ttCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTg  >  1:1347316/1‑61 (MQ=255) ttCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTg  >  1:1574250/1‑61 (MQ=255) ttCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTg  >  1:1771550/1‑61 (MQ=255) ttCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTg  >  1:1880946/1‑61 (MQ=255) ttCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTg  >  1:1076174/1‑61 (MQ=255) ttCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTg  >  1:215210/1‑61 (MQ=255) ttCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTg  >  1:2208794/1‑61 (MQ=255) ttCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTg  >  1:2370123/1‑61 (MQ=255) ttCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTg  >  1:2382824/1‑61 (MQ=255) ttCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTg  >  1:2846573/1‑61 (MQ=255) ttCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTg  >  1:288429/1‑61 (MQ=255) ttCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTg  >  1:2920557/1‑61 (MQ=255) ttCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTg  >  1:2938238/1‑61 (MQ=255) ttCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACAAGTTCTTTGGCATCCCGCTTg  >  1:1346635/1‑61 (MQ=255) |                                                             TTCCAGAGCGCGACGGATCTCTTCGAAAAACAGTTCAACCAGTTCTTTGGCATCCCGCTTG  >  minE/1123127‑1123187

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑