Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1226479	1226483	5	83 [0]	[0] 49	pphA	serine/threonine‑specific protein phosphatase 1

GCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTT  >  minE/1226484‑1226545 |                                                              gCGACTGTGTACTTCATGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:3023702/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:3450431/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:2578158/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:2731290/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:2794931/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:2799946/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:2969916/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:3098790/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:3174927/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:326615/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:3274479/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:3364732/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:3390918/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:2224420/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:3530453/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:3613579/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:3625140/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:411202/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:417824/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:468933/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:49087/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:643233/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:689574/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:787347/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:945227/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:1681717/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:1100153/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:1253154/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:1260933/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:1265921/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:1396859/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:1550717/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:1579893/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:1583708/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:159944/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:1639949/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:1675506/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:1087863/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:1775030/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:1806438/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:1842252/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:1875929/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:2014976/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:2079057/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:2117222/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:215183/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:2172485/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:217834/62‑1 (MQ=255) gCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCtt  <  1:220276/62‑1 (MQ=255) |                                                              GCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGTTTTCGCTT  >  minE/1226484‑1226545

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑