Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2496143	2496144	2	45 [0]	[0] 5	emrD	multidrug efflux system protein

TGGACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACA  >  minE/2496080‑2496142                                                               | tGGACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATC‑GGCCATAAAACa  <  1:1013301/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGGAATCGGGCCATAAAACa  <  1:702442/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGATATCGGGCCATAAAACa  <  1:999775/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:803985/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:526184/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:60481/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:616162/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:993497/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:708211/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:719590/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:721523/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:763168/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:79670/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:969343/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:849597/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:85915/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:891493/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:892873/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:904449/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:917576/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:923366/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:924618/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:927440/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:496759/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:1036214/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:1047138/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:1149334/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:1166327/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:1176901/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:1199096/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:127855/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:158035/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:164300/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:177669/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:225352/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:253058/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:273801/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:296347/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:310531/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:365459/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:396302/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:43249/62‑1 (MQ=255)  ggACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:490665/62‑1 (MQ=255)   gACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:1030513/61‑1 (MQ=255)        tCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACa  <  1:5492/56‑1 (MQ=255)                                                               | TGGACATTCCGACGAGGATCACCGGTCGGCGGCCCACGCGGTCGGAAATCGGGCCATAAAACA  >  minE/2496080‑2496142

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑