Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2661413	2661423	11	36 [0]	[0] 52	rtcR	sigma 54‑dependent transcriptional regulator of rtcBA expression

CTGCGGAAAGCGACTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTG  >  minE/2661361‑2661412                                                    | cTGCGGAAAGCGACTTTGCCTGTCGGCAGATAGCGATAACGTGTTCCAGTTg  <  1:466882/52‑1 (MQ=255) cTGCGGAAAGCGACTTTGCCTGGCGGCAGATAGCTATAACGTGTTCCAGTTg  <  1:1046767/52‑1 (MQ=255) cTGCGGAAAGCGACTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTg  <  1:486981/52‑1 (MQ=255) cTGCGGAAAGCGACTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTg  <  1:2826537/52‑1 (MQ=255) cTGCGGAAAGCGACTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTg  <  1:2827537/52‑1 (MQ=255) cTGCGGAAAGCGACTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTg  <  1:2828127/52‑1 (MQ=255) cTGCGGAAAGCGACTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTg  <  1:3002971/52‑1 (MQ=255) cTGCGGAAAGCGACTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTg  <  1:3046672/52‑1 (MQ=255) cTGCGGAAAGCGACTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTg  <  1:319916/52‑1 (MQ=255) cTGCGGAAAGCGACTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTg  <  1:3279656/52‑1 (MQ=255) cTGCGGAAAGCGACTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTg  <  1:2821002/52‑1 (MQ=255) cTGCGGAAAGCGACTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTg  <  1:49140/52‑1 (MQ=255) cTGCGGAAAGCGACTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTg  <  1:513558/52‑1 (MQ=255) cTGCGGAAAGCGACTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTg  <  1:632778/52‑1 (MQ=255) cTGCGGAAAGCGACTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTg  <  1:711380/52‑1 (MQ=255) cTGCGGAAAGCGACTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTg  <  1:827552/52‑1 (MQ=255) cTGCGGAAAGCGACTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTg  <  1:858126/52‑1 (MQ=255) cTGCGGAAAGCGACTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTg  <  1:929611/52‑1 (MQ=255) cTGCGGAAAGCGACTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTg  <  1:97512/52‑1 (MQ=255) cTGCGGAAAGCGACTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTg  <  1:2125483/52‑1 (MQ=255) cTGCGGAAAGCGACTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTg  <  1:1243451/52‑1 (MQ=255) cTGCGGAAAGCGACTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTg  <  1:1273569/52‑1 (MQ=255) cTGCGGAAAGCGACTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTg  <  1:1380703/52‑1 (MQ=255) cTGCGGAAAGCGACTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTg  <  1:1390811/52‑1 (MQ=255) cTGCGGAAAGCGACTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTg  <  1:1636474/52‑1 (MQ=255) cTGCGGAAAGCGACTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTg  <  1:1961928/52‑1 (MQ=255) cTGCGGAAAGCGACTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTg  <  1:2802307/52‑1 (MQ=255) cTGCGGAAAGCGACTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTg  <  1:2331702/52‑1 (MQ=255) cTGCGGAAAGCGACTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTg  <  1:2357698/52‑1 (MQ=255) cTGCGGAAAGCGACTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTg  <  1:2469820/52‑1 (MQ=255) cTGCGGAAAGCGACTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTg  <  1:2618155/52‑1 (MQ=255) cTGCGGAAAGCGACTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTg  <  1:2632329/52‑1 (MQ=255)  tGCGGAAAGCGACTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTg  <  1:1313696/51‑1 (MQ=255)  tGCGGAAAGCGACTTTGCCTGGCGGCAGATAGCGATAACGTGGTCCAGTTg  <  1:213161/51‑1 (MQ=255)      gAAAGCGACTTTGCCTGGCGGCAGTTAGCGATAACGTGTTCCAGTTg  <  1:2094463/47‑1 (MQ=255)          gCGACTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTg  <  1:2599360/43‑1 (MQ=255)                                                    | CTGCGGAAAGCGACTTTGCCTGGCGGCAGATAGCGATAACGTGTTCCAGTTG  >  minE/2661361‑2661412

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑