Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2661413	2661423	11	36 [0]	[0] 52	rtcR	sigma 54‑dependent transcriptional regulator of rtcBA expression

AGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCC  >  minE/2661424‑2661485 |                                                              agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGt                        >  1:1529789/1‑40 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCtctc   >  1:248330/1‑61 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCtctc   >  1:2441738/1‑61 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCtctc   >  1:1477196/1‑61 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCtctc   >  1:675587/1‑61 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCtctc   >  1:2226975/1‑61 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCtctc   >  1:2094467/1‑61 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:3228686/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:2523754/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:2564983/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:2652257/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:267391/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:2702877/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:279775/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:2800114/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:2919635/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:3120721/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:3178388/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:2405976/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:3237134/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:3284452/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:3286097/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:3288108/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:374925/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:685498/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:756824/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:822932/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:827315/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:941099/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:1882405/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:1260514/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:1283900/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:1319658/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:1490277/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:1548578/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:1552752/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:1562572/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:1581965/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:1603426/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:1743484/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:1784891/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:1884163/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:1910947/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:1934957/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:2162400/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:2298327/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:2326306/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:2369459/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:2396150/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:1181271/1‑62 (MQ=255) agagATCGATGTTTTCTGCCTCTGCGCCCAGCAACACCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:2001332/1‑62 (MQ=255) agagATCGATGTTTTCTGCCCCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTcc  >  1:2480035/1‑62 (MQ=255) |                                                              AGAGATCGATGTTTTCTGCCTCTGCGCCCAGCAACGCCGTAAGCGCGGAGGGGCGGCTCTCC  >  minE/2661424‑2661485

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑