Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1226538	1226548	11	8 [0]	[0] 24	pphA	serine/threonine‑specific protein phosphatase 1

TTGCCGGTGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGT  >  minE/1226476‑1226537                                                              | ttGCCGGTGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTTACATTTTTCCAGCGCCGt  >  1:2911407/1‑62 (MQ=255) ttGCCGGTGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGt  >  1:1209209/1‑62 (MQ=255) ttGCCGGTGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGt  >  1:1950447/1‑62 (MQ=255) ttGCCGGTGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGt  >  1:2642394/1‑62 (MQ=255) ttGCCGGTGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGt  >  1:2766917/1‑62 (MQ=255) ttGCCGGTGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGt  >  1:417978/1‑62 (MQ=255) ttGCCGGTGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGt  >  1:446206/1‑62 (MQ=255) ttGCCGGTGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGt  >  1:659464/1‑62 (MQ=255)                                                              | TTGCCGGTGCGACTGTGTACTTCAAGAATAAAGGGCAAATGCTGACATTTTTCCAGCGCCGT  >  minE/1226476‑1226537

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑