Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1678138	1678140	3	46 [0]	[0] 27	pbpC	fused transglycosylase and transpeptidase

GGCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTA  >  minE/1678076‑1678137                                                              | ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:371875/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:112056/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:2572843/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:2579358/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:2638973/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:265616/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:2890359/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:291814/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:2963029/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:3108110/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:3128340/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:2535572/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:50929/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:516214/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:609075/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:621367/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:621615/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:677668/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:685264/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:787382/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:854834/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:968717/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:1841971/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:1199035/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:1206010/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:1329152/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:1353028/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:1418262/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:1689111/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:1711546/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:1734432/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:2462399/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:1923626/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:2028318/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:2043571/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:2074274/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:2131555/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:2233528/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:2260350/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:2292957/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:2347280/62‑1 (MQ=255) ggCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:2402450/62‑1 (MQ=255)  gCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:1443562/61‑1 (MQ=255)               acacGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:808222/48‑1 (MQ=255)                 acGTTTGCCATTTTCATCCAGCCAGATGGGTAAACGAATGCCATTa  <  1:2196606/46‑1 (MQ=255)                         cATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTa  <  1:682018/38‑1 (MQ=255)                                                              | GGCAATCAGCGGCAACACGTTTGCCATTTTCATCCAGCCAGATGGGGAAACGAATGCCATTA  >  minE/1678076‑1678137

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑