Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ minE 825296 825480 185 111 [0] [0] 48 ychN/ychP conserved hypothetical protein/predicted invasin

Only 100 of 111 total aligned reads displayed.

CTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTC  >  minE/825235‑825295
                                                            |
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGTTTTTTTGCATTATTTACTCCTGTATTc  <  1:940511/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:634737/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:726086/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:725265/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:718107/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:709154/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:704606/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:700944/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:682754/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:667887/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:656461/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:642029/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:635535/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:748439/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:631879/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:631749/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:626878/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:619138/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:603805/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:598412/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:56602/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:1005773/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:55875/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:554281/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:836373/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:968780/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:962449/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:956576/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:954911/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:950567/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:944430/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:939639/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:913592/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:896817/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:880755/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:873739/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:74522/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:835800/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:831409/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:807637/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:782078/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:774976/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:763893/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:758171/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:75785/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:751402/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:559697/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:242408/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:548846/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:319215/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:31870/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:30623/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:306080/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:298788/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:290477/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:284698/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:275516/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:27048/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:257367/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:2532/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:323106/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:229577/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:213237/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:205516/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:189464/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:155746/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:123636/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:120118/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:11395/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:1030423/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:102160/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:1008414/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:468568/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:546639/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:529949/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:52235/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:5174/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:514172/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:49292/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:492547/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:490880/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:489230/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:486547/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:328350/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:456217/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:441906/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:43519/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:428775/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:42723/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:400103/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:352608/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:347650/61‑1 (MQ=255)
cTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:339908/61‑1 (MQ=255)
 tCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:649024/60‑1 (MQ=255)
 tCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:898514/60‑1 (MQ=255)
 tCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:590156/60‑1 (MQ=255)
  cccGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:716901/59‑1 (MQ=255)
      tAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:351775/55‑1 (MQ=255)
                        aCGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:772698/37‑1 (MQ=255)
                         cGATCACGATTTTTTGCATTATTTACTCCTGTATTc  <  1:948762/36‑1 (MQ=255)
                                                            |
CTCCCGTAAGGTGCGCCATTGGCAACGATCACGATTTTTTGCATTATTTACTCCTGTATTC  >  minE/825235‑825295

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑