Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	559181	559319	139	10 [0]	[0] 67	cmr	multidrug efflux system protein

ACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCGG  >  minE/559320‑559379 |                                                            aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:631925/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:758069/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:74259/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:737201/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:715957/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:713487/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:702541/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:651601/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:632219/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:766077/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:62808/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:620855/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:619086/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:608423/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:599650/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:593950/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:563830/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:100766/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:780858/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:788528/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:822488/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:86974/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:876709/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:884787/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:886369/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:919728/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:927187/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:92831/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:935005/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:943287/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:952964/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:959217/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:966358/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:545884/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:1000328/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:1015317/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:1016514/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:101703/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:119521/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:137867/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:142525/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:145396/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:154317/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:169312/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:202278/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:230086/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:257634/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:269528/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:271403/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:289141/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:550512/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:545080/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:534525/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:511388/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:46525/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:448647/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:44756/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:41810/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:396007/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:386629/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:38155/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:380285/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:355472/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:279024/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACCGAAAGAACTCgg  <  1:664304/60‑1 (MQ=255) aCGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTCTCACTGAAAGAACTCgg  <  1:230225/60‑1 (MQ=255) aCGAGCCATGCCAGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCgg  <  1:997699/60‑1 (MQ=255) |                                                            ACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGAAAGAACTCGG  >  minE/559320‑559379

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑