| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 2159817 = | 34 (0.320) | 6 (0.070) | 3/84 | NT | 10.2% | intergenic (+43/‑185) | ispB/sfsB | octaprenyl diphosphate synthase/DNA‑binding transcriptional regulator |
| ? | minE | 2159914 = | 77 (0.850) | intergenic (+140/‑88) | ispB/sfsB | octaprenyl diphosphate synthase/DNA‑binding transcriptional regulator | |||||
TTCAGAATATATAAAGATGCACATCCCTATTTTTCAGGTGTTATAGAGCTGAATAAGTGTTTTTATGGAACTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/2159889‑2159817‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaacttTTTAGAGCAATAGGCCATCAGGAGTATAGTGATGCTCGACAGAAGAAGTGTTCTGAATGAAAGCGACTAA > minE/2159914‑2159983 TTCAGAATATATAAAGATGCACATCCCTATTTTTCAGGTGTTATAGAGCTGAATAAGTGTTTTTATGGAAC > 1:2640136/1‑71TTCAGAATATATAAAGATGCACATCCCTATTTTTCAGGTGTTATAGAGCTGAATAAGTGTTTTTATGGAA > 1:5417249/1‑70TTCAGAATATATAAAGATGCACATCCCTATTTTTCAGGTGTTATACAGCTGAATAAGTGTTTTAATGGAA > 1:566636/1‑70 TCAGAATATATAAAGATGCACATCCCTATTTTTCAGGTGTTATAGAGCTGAATAAGTGTTTTTATGGAACT > 1:5052230/1‑71 CAGAATATATAAAGATGCACATCCCTATTTTTCAGGTGTTATAGAGCTGAATAAGTGTTTTTATGGAACT < 1:2364178/70‑1 TATTTTTCAGGTGTTATAGAGCTGAATAAGTGTTTTTATGGAACT < 1:2010329/45‑1 TATTTTTCAGGTGTTATAGAGCTGAATAAGTGTTTTTATGGAACT < 1:3017100/45‑1 TTTTTCAGGTGTTATAGAGCTGAATAAGTGTTTTTATGGA < 1:1714310/40‑1 TTTTTCAGGTGTTATAGAGCTGAATAAGTGTTTTTATGGA < 1:5978974/40‑1 TTTTTCAGGTGTTATAGAGCTGAATAAGTGTTTTTATGGA < 1:3129723/40‑1 TTTTTCAGGTGTTATAGAGCTGAATAAGTGTTTTTATGGA < 1:5073291/40‑1 TTTTTCAGGTGTTATAGAGCTGAATAAGTGTTTTTATGGA < 1:3336152/40‑1 TTTTTCAGGTGTTATAGAGCTGAATAAGTGTTTTTATGGA < 1:4780077/40‑1 TTTTTCAGGTGTTATAGAGCTGAATAAGTGTTTTTATGGA < 1:4553441/40‑1 GAGCTGAATAAGTGTTTTTATGGAACTTTTTAGAGCAATAGGCCATCAGGAGTATAGTGATGCTCGACAG > 1:1745471/1‑70 TAAGTGTTTTTATGGAACTTTTTAGAGCAATAGGCCAT < 1:6745849/38‑1 AGTGTTTTTATGGAACTTTTTAGAGCAATAGGCCATCA > 1:4254015/1‑38 AGTGTTTTTATGGAACTTTTTAGAGCAATAGGCCATCA > 1:325279/1‑38 AGTGTTTTTATGGAACTTTTTAGAGCAATAGGCCATCA > 1:317029/1‑38 AGTGTTTTTATGGAACTTTTTAGAGCAATAGGCCATCA > 1:1826556/1‑38 GAACTTTTTAGAGCAATAGGCCATCAGGAGTATAGTGATGCTCGACAGAAGAAGTGTTCTGAA > 1:2119046/1‑63 CTTTTTAGAGCAATAGGCCATCAGGAGTATAGTGATGCTCGAGAGAAGAAGTGTTCTG < 1:206584/58‑1 TTTTTAGAGCAATAGGCCATCAGGAGTATAGTGATGCTCGACAGAAGAAGTGTTCTGAATG < 1:1513399/61‑1 TTTTAGAGCAATAGGCCATCAGGAGTATAGTGATGCTCGACAGAAGAAGTGTTCTGAATGAAAGCGACTAA > 1:3538302/1‑71 TTCAGAATATATAAAGATGCACATCCCTATTTTTCAGGTGTTATAGAGCTGAATAAGTGTTTTTATGGAACTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/2159889‑2159817‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaacttTTTAGAGCAATAGGCCATCAGGAGTATAGTGATGCTCGACAGAAGAAGTGTTCTGAATGAAAGCGACTAA > minE/2159914‑2159983 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |