| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 2159817 = | 34 (0.320) | 6 (0.070) | 3/84 | NT | 10.2% | intergenic (+43/‑185) | ispB/sfsB | octaprenyl diphosphate synthase/DNA‑binding transcriptional regulator |
| ? | minE | 2159914 = | 77 (0.850) | intergenic (+140/‑88) | ispB/sfsB | octaprenyl diphosphate synthase/DNA‑binding transcriptional regulator | |||||
GCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGTAAGTTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAGGGATGTGCATCTTTATATATTCT > minE/2159747‑2159886 | ttagtcgctttcattcagaacacttcttctgtcgagcatcactatactcctgatggcctattgctctaaaa > 1:3538302‑M1/71‑71 (MQ=255) ttCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGTAAg < 1:5182959/62‑1 (MQ=255) cattcagaacacttcttctgtcgagcatcactatactcctgatggcctattgctctaaaaa < 1:1513399‑M1/2‑1 (MQ=255) ttcagaacacttcttctgtcgagcatcactatactcctgatggcctattgctctaaaAAGTTc > 1:2119046‑M1/58‑63 (MQ=255) cagaacacttcttctctcgagcatcactatactcctgatggcctattgctctaaaAAg < 1:206584‑M1/3‑1 (MQ=255) gTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGTAAGTTCCATaaa < 1:301529/59‑1 (MQ=255) gTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGTAAGTTCCATaaa < 1:4080706/59‑1 (MQ=255) gTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGTAAGTTCCATAAAAACACTTATTc < 1:5099940/70‑1 (MQ=255) aaTCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGTAAGTTCCATaa > 1:6603311/1‑55 (MQ=255) ctgtcgagcatcactatactcctgatggcctattgctctaaaAAGTTCCATAAAAACACTTATTCAGctc > 1:1745471‑M1/43‑70 (MQ=255) ccctcccctcATCCCGCGCAGCGCGCGGGATGGTTCCAGTAAGTTCCATAAAAACACTTATTCAGCTCtat < 1:1259720/71‑1 (MQ=255) tcATCCCGCGCAGCGCGCGGGATGGTTCCAGTAAGTTCCATaa < 1:2599737/43‑1 (MQ=255) tcATCCCGCGCAGCGCGCGGGATGGTTCCAGTAAGTTCCATAAAAACACTTATTCAGCTCTATAACACCt > 1:2487181/1‑70 (MQ=255) cATCCCGCGCAGGGCGCGGGATGGTTCCAGTAAGTTCCATAAAAACACTTATTCAGCTCTATaa > 1:2801824/1‑64 (MQ=255) aTCCCGCGCAGCGCGCGGGATGGTTCCAGTAAGTTCCATaaaa > 1:6508902/1‑43 (MQ=255) aTCCCGCGCAGCGCGCGGGATGGTTCCAGTAAGTTCCATAAAAACACTTATTCAGCTCTATAACACCTg > 1:5019793/1‑69 (MQ=255) aTCCCGCGCAGCGCGCGGGATGGTTCCAGTAAGTTCCATAAAAACACTTATTCAGCTCTATAACACCTg > 1:4220966/1‑69 (MQ=255) aTCCCGCGCAGCGCGCGGGATGGTTCCAGTAAGTTCCATAAAAACACTTATTCAGCTCTATAACACCTGa > 1:5955070/1‑70 (MQ=255) ccGCGCAGCGCGCGGGATGGTTCCAGTAAGTTCCATAAAAACACTTATTCAGct > 1:4047688/1‑54 (MQ=255) ccGCGCAGCGCGCGGGATGGTTCCAGTAAGTTCCATAAAAACACTTATTCAGCTCTATAACACCTGaaaaa < 1:1534849/71‑1 (MQ=255) ccGCGCAGCGCGCGGGATGGTTCCAGTAAGTTCCATAAAAACACTTATTCAGCTCTATAACACCTGaaaaa < 1:4383787/71‑1 (MQ=255) cgcgCAGCGCGCGGGATGGTTCCAGTAAGTTCCATAAAAACACTTATTCAGCTCTATAACACCTGaaaaa < 1:1546497/70‑1 (MQ=255) gcgcAGCGCGCGGGATGGTTCCAGTAAGTTCCATAAAAACACTTATTCAGCTCTATAACACCTGaaaaa > 1:6073659/1‑69 (MQ=255) gcgcAGCGCGCGGGATGGTTCCAGTAAGTTCCATAAAAACACTTATTCAGCTCTATAACACCTGaaaaa > 1:5460620/1‑69 (MQ=255) gcgcAGCGCGCGGGATGGTTCCAGTAAGTTCCATAAAAACACTTATTCAGCTCTATAACACCTGaaaaa > 1:1479278/1‑69 (MQ=255) cgcAGCGCGCGGGATGGTTCCAGTAAGTTCCATAAAAACACTTATTCAg > 1:2929560/1‑49 (MQ=255) cgcAGCGCGCGGGATGGTTCCAGTAAGTTCCATAAAAACACTTATTCAg > 1:3665372/1‑49 (MQ=255) aGCGCGCGGGATGGTTCCAGTAAGTTCCATAAAAACACt < 1:6439401/39‑1 (MQ=255) aGCGCGCGGGATGGTTCCAGTAAGTTCCATAAAAACACt < 1:877062/39‑1 (MQ=255) aGCGCGCGGGATGGTTCCAGTAAGTTCCATAAAAACACt < 1:3942323/39‑1 (MQ=255) aGCGCGCGGGATGGTTCCAGTAAGTTCCATAAAAACACt < 1:1328309/39‑1 (MQ=255) aGCGCGCGGGATGGTTCCAGTAAGTTCCATAAAAACACTTATTCAGCTCtat < 1:2362412/52‑1 (MQ=255) tgatggcctattgctctaaaAAGTTCCATAAAAACACt > 1:4254015‑M1/21‑38 (MQ=255) tgatggcctattgctctaaaAAGTTCCATAAAAACACt > 1:1826556‑M1/21‑38 (MQ=255) tgatggcctattgctctaaaAAGTTCCATAAAAACACt > 1:325279‑M1/21‑38 (MQ=255) tgatggcctattgctctaaaAAGTTCCATAAAAACACt > 1:317029‑M1/21‑38 (MQ=255) atggcctattgctctaaaAAGTTCCATAAAAACACTTa < 1:6745849‑M1/20‑1 (MQ=255) cgGGATGGTTCCAGTAAGTTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAGGGATGTGc < 1:5824693/70‑1 (MQ=255) gATGGTTCCAGTAAGTTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAGGGATGTGCATCt > 1:915168/1‑71 (MQ=255) gATGGTTCCAGTAAGTTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAGGGATGTGCATCt > 1:321819/1‑71 (MQ=255) gATGGTTCAAGTAAGTTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAGGGATGTGCATCt > 1:6139948/1‑71 (MQ=255) gTTCCAGTAAGTTCCATAAAAACACTTATTCAGCTCTATAACACCTGaaaaa > 1:6950510/1‑52 (MQ=255) ttCCAGTAAGTTCCATAAAAACACTTATTCAGCTCtat < 1:4130825/38‑1 (MQ=255) ttCCAGTAAGTTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAGGGATGTGCATCTTtata > 1:3097/1‑71 (MQ=255) ttCCAGTAAGTTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAGGGATGTGCATCTTtata < 1:4416949/71‑1 (MQ=255) ccAGTAAGTTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAGGGATGTGCATCTTtatat < 1:4272825/70‑1 (MQ=255) tAAGTTCCATAAAAACACTTATTCAGCTCTATAACACCTGaaaaa < 1:3337819/45‑1 (MQ=255) tAAGTTCCATAAAAACACTTATTCAGCTCTATAACACCTGaaaaa < 1:1156622/45‑1 (MQ=255) tAAGTTCCATAAAAACACTTATTCAGCTCTATAACACCTGaaaaa < 1:913601/45‑1 (MQ=255) tAAGTTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAGGGATGTGCATCTTTATATATTCt > 1:2186043/1‑71 (MQ=255) tAAGTTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAGGCATGTGCATCTTTATATATTCt > 1:2643542/1‑71 (MQ=255) tAAGTTCCATAAAAACACTTATTCAGATCTATAACACCTGAAAAATAGGGAt > 1:6075642/1‑52 (MQ=255) | GCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGTAAGTTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAGGGATGTGCATCTTTATATATTCT > minE/2159747‑2159886 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |