| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 37631 = | 25 (0.650) | 4 (0.130) +GCTGATGCCG |
3/78 | NT | 9.8% | coding (209/1569 nt) | caiC | predicted crotonobetaine CoA ligase:carnitine CoA ligase |
| ? | W3110S.gb | = 3401750 | 68 (1.770) | coding (1438/1941 nt) | yhdA | conserved inner membrane protein | |||||
AAGGCGACAAGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/37643‑37631‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTGGCGATTCAGGTT < W3110S.gb/3401750‑3401736 |||||||||| AAGGCGACAAGGTGCTGATGCCGCTGGCGATTCAGGTT < 1:3139309/38‑1AAGGCGACAAGGTGCTGATGCCGCTGGCGATTCAGGT > 1:3670470/1‑37 GCGACAAGGTGCTGATGCCGCTGGCGATTCAGTTT < 1:1092448/35‑1 GCGACAAGGTGCTGATGCCGCTGGCGATTCAGGTT > 1:3386295/1‑35 |||||||||| AAGGCGACAAGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/37643‑37631‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTGGCGATTCAGGTT < W3110S.gb/3401750‑3401736 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |