| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 37631 = | 25 (0.650) | 4 (0.130) +GCTGATGCCG |
3/78 | NT | 9.8% | coding (209/1569 nt) | caiC | predicted crotonobetaine CoA ligase:carnitine CoA ligase |
| ? | W3110S.gb | = 3401750 | 68 (1.770) | coding (1438/1941 nt) | yhdA | conserved inner membrane protein | |||||
ATCGCGCCAATTTTTGCCAGCCCGAACCAGCAAAAGATAAATTCCGGGCAGTTGTCGAGATGTAGTGCAACCTTGTCGCCTTTGCGAATCCCCAGCGTATAAAACAGGTTTGCCGTGCGGTTAATCTCCTGATTT > W3110S.gb/37562‑37696 | aTCGCGCCAATTTTTGCCAGCCCGAACCAGCAAAAGATAAATTCCGGGCAGTTGTCGAGATGTAGTGCaa < 1:1409737/70‑1 (MQ=255)aTCGCGCCAATTTTTGCCAGCCCGAACCAGCAAAAGATAAATTCCGGGCAGTTGTCGAGATGTAGTGCaa < 1:3321505/70‑1 (MQ=255) cAATTTTTGCCAGCCCGAACCAGCAAAAGATAAATTCCGGGCAGTTGTCGAGATGTAGTGCAACCTTGTCg > 1:2987082/1‑71 (MQ=255) ttGCCAGCCCGAACCAGCAAAAGATAAATTCCGGGCAGTTGTCGAGATGTAGTGCAACCTTGTCGCCttt < 1:855042/70‑1 (MQ=255) aGCCCGAACCAGCAAAAGATAAATTCCGGGCAGTTGTCGAGATGTAGTGCAACCTTGTCGCCTTTGCGAAt < 1:1085167/71‑1 (MQ=255) ccGAACCAGCAAAAGATAAATTCCGGGCAGTTGTCGAGATGTAGTGCAAc > 1:2094970/1‑50 (MQ=255) cGAACCAGCAAAAGATAAATTCCGGGCAGTTGTCGAGATGTAGTGCAACCTTGTCGCCTTTGCGAATccc > 1:2263094/1‑70 (MQ=255) aCCAGCAAAAGATAAATTCCGGGCAGTTGTCGAGATGTAGTGCAACCTTGTCGCCTTTGCGAATCCCCAg > 1:380085/1‑70 (MQ=255) cAGCAAAAGATAAATTCCGGGCAGTTGTCGAGATGTAGTGCAACCTTGTCGCCTTTGCGAATCCCCAGCGt < 1:794285/71‑1 (MQ=255) aaaaGATAAATTCCGGGCAGTTGTCGAGATGTAGTGCAACCTTGTCGCCTTTGCGAATCCCCAGCGTATaa < 1:2993241/71‑1 (MQ=255) aaaGATAAATTCCGGGCAGTTGTCGAGATGTAGTGCAACCTTGTCGCCttt > 1:3132307/1‑51 (MQ=255) aaGATAAATTCCGGGCAGTTGTCGAGATGTAGTGCAACCTTGTCGCCTTTGCGAATCCCCAGCGTATaaaa < 1:511283/71‑1 (MQ=255) aGATAAATTCCGGGCAGTTGTCGAGATGTAGTGCAACCTTGt > 1:864640/1‑42 (MQ=255) aGATAAATTCCGGGCAGTTGTCGAGATGTAGTGCAACCTTGTCGCCTTTGCGAATCCCCAGCGTATaaaa > 1:2620871/1‑70 (MQ=255) aGATAAATTCCGGGCAGTTGTCGAGATGTAGTGCAACCTTGTCGCCTTTGCGAATCCCCAGCGTATAAAAc < 1:3660339/71‑1 (MQ=255) tAAATTCCGGGCAGTTGTCGAGATGTAGTGCAACCTTGTCGCCTTTGCGAATCCCCAGCGTATAAAACAgg < 1:2982099/71‑1 (MQ=255) aaaTTCCGGGCAGTTGTCGAGATGTAGTGCAACCTTGTCGCCt > 1:403597/1‑43 (MQ=255) aTTCCGGGCAGTTGTCGAGATGTAGTGCAACCTTGTCGCCTTTGCGAATCCCCAGCGTATAAAACAGGttt < 1:276289/71‑1 (MQ=255) tCCGGGCAGTTGTCGAGATGTAGTGCAACCTTGTCGCCTTTGCGAATCCCCAGCGTATAAAACAGGTTTg < 1:3683895/70‑1 (MQ=255) aacctgaatcgccagcggcatcagcACCTTGTCGc > 1:3386295‑M1/26‑35 (MQ=255) aacctgaatcgccagcggcatcagcACCTTGTCGCCtt < 1:3139309‑M1/13‑1 (MQ=255) aaactgaatcgccagcggcatcagcACCTTGTCGc < 1:1092448‑M1/10‑1 (MQ=255) acctgaatcgccagcggcatcagcACCTTGTCGCCtt > 1:3670470‑M1/25‑37 (MQ=255) gCAGTTGTCGAGATGTAGTGCAACCTTGTCGCCTTTGCGAATCCCCAGCGTATAAAACAg < 1:2226149/60‑1 (MQ=255) gCAGTTGTCGAGATGTAGTGCAACCTTGTCGCCTTTGCGAATCCCCAGCGTATAAAACAGGTTTGCCGTg < 1:1991576/70‑1 (MQ=255) gTCGAGATGTAGTGCAACCTTGTCGCCTTTGCGAATCCCCAGCGTATaaaa > 1:1189933/1‑51 (MQ=255) gTCGAGATGTAGTGCAACCTTGTCGCCTTTGCGAATCCCCAGCGTATAAAACAGGTTTGCCGTGCg > 1:2049379/1‑66 (MQ=255) cGAGATGTAGTGCAACCTTGTCGCCTTTGCGAATCCCCCGCGta > 1:1107195/1‑44 (MQ=255) aTGTAGTGCAACCTTGTCGCCTTTGCGAATCCCCAGCg < 1:850441/38‑1 (MQ=255) tGTAGTGCAACCTTGTCGCCTTTGCGAATCCCCAGCGTATAAAACAGGTTTGCCGTGCGGTTAATCTCCTg < 1:171221/71‑1 (MQ=255) gTAGTGCAACCTTGTCGCCTTTGCGAATCCCCAGCGTATAAAACAGGTTTGCCGTGCGGTTAATCTCCTGa > 1:1335693/1‑71 (MQ=255) tAGTGCAACCTTGTCGCCTTTGCGAATCCCCAGCGTATaaaa > 1:208354/1‑42 (MQ=255) gTGCAACCTTGTCGCCTTTGCGAATCCCCAGCGTATAAAACAGGtt > 1:1476208/1‑46 (MQ=255) gTGCAACCTTGTCGCCTTTGCGAATCCCCAGCGTATAAAACAGGTTTGCCGTGCGGTTAATCTCCTGAttt < 1:3564021/71‑1 (MQ=255) gTGCAACCTTGTCGCCTTTGCGAATCCCCAGCGTATAAAACAGGTTTGCCGTGCGGTTAATCTCCTGAtt > 1:1124817/1‑70 (MQ=255) cAACCTTGTCGCCTTTGCGAATCCCCAGCGTATAAAAc > 1:847076/1‑38 (MQ=255) | ATCGCGCCAATTTTTGCCAGCCCGAACCAGCAAAAGATAAATTCCGGGCAGTTGTCGAGATGTAGTGCAACCTTGTCGCCTTTGCGAATCCCCAGCGTATAAAACAGGTTTGCCGTGCGGTTAATCTCCTGATTT > W3110S.gb/37562‑37696 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |