| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 70061 = | 50 (1.300) | 563 (18.940) +CGCGTACAACT |
85/76 | NT | 93.1% | intergenic (‑13/‑326) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 236044 = | 58 (1.510) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
Only 100 of 887 total aligned reads displayed.
AGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/70130‑70061‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCAC > W3110S.gb/236044‑236113 ||||||||||| ATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGC < 1:3624278/71‑1 TAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCG > 1:2686943/1‑70 GCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTAC < 1:1544712/71‑1 GGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACA > 1:100763/1‑70 TCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTC < 1:647546/71‑1 TCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTC < 1:888717/71‑1 TCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACT > 1:2341925/1‑70 TCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAAC > 1:1487732/1‑69 CTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATAGCCGTTTTTTTGGACGCGTACAACTCAAGTCT < 1:1305672/71‑1 CTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCT > 1:2843869/1‑71 ACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTG < 1:1734064/69‑1 GCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAA > 1:723392/1‑57 CTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATA < 1:2313773/71‑1 CTTTTTATAGCAACTCTCTACTGTTTCTCCTTACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATA < 1:1801124/71‑1 TTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATA > 1:3543497/1‑70 TTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAA > 1:3270197/1‑71 TTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAAT > 1:3108178/1‑71 TTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAAT > 1:777002/1‑71 TTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAA < 1:2897582/70‑1 TTATCGCAACTCTCTACTGTTTCTCCATACCCTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAAT < 1:2805992/70‑1 TTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAAT < 1:3578454/70‑1 TTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAAT > 1:1661738/1‑70 TTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAAT > 1:1430874/1‑70 TTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAAC > 1:429104/1‑53 TATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACAT > 1:3311551/1‑65 GCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC < 1:3217636/71‑1 CAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCT < 1:700750/71‑1 AACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTA > 1:1710099/1‑71 ACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTAT > 1:2711003/1‑71 ACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTAT > 1:3484348/1‑71 ACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTC < 1:2370153/47‑1 CTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCT < 1:1265363/52‑1 TCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTAT > 1:2744190/1‑69 TCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTAC < 1:386356/40‑1 CTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAA > 1:1461870/1‑46 CTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:2281024/69‑1 TACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:2788142/68‑1 TACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAA < 1:740841/43‑1 TACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAA > 1:2157529/1‑38 TACTGTTTCTACATACCCG‑TTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCA < 1:1595982/69‑1 ACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTAT > 1:952582/1‑64 CTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGA > 1:664218/1‑47 TGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTC < 1:3238556/38‑1 GTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC > 1:1226135/1‑70 TTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAA > 1:503358/1‑71 TTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAA < 1:3332731/71‑1 TTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC < 1:1982644/69‑1 TTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAA > 1:3417215/1‑38 TTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT > 1:3042731/1‑71 TCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT < 1:1048864/70‑1 TCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAA > 1:2143498/1‑69 TCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAAT > 1:977821/1‑49 TCTCCATACCCGTTTTTTT‑GACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTA > 1:2076944/1‑71 TCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT > 1:2395867/1‑68 CATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACAC > 1:3436422/1‑71 CATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTA < 1:85927/68‑1 CATACCCGTTTTTTTGGACGCGTACAACTCAAGTCAGACATAA > 1:1406109/1‑43 CATACCCGTTTTTTTGGACGCGTACAACTCAAGTC > 1:3016061/1‑35 ATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTAT < 1:3160578/53‑1 TACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC < 1:1343999/71‑1 CCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC < 1:1623883/69‑1 CCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACAC > 1:458184/1‑67 CCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATA < 1:2434334/37‑1 CGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCA < 1:1200562/69‑1 GTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC > 1:2467714/1‑66 GTTTTTTTGGACGCGTACAACTCAAGTCTGACATAA < 1:62066/36‑1 TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCC < 1:1916516/66‑1 TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC < 1:2498572/55‑1 TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:2534715/49‑1 TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTAT < 1:942192/46‑1 TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAAAGACCG > 1:826794/1‑42 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT > 1:3070049/1‑71 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT > 1:2105695/1‑71 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT > 1:570941/1‑71 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC > 1:3128213/1‑63 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAA > 1:3353328/1‑55 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC > 1:2958151/1‑53 TTTTTGGACGCGTACAACTCAAGTCTGACATAAAT > 1:1849986/1‑35 TTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATT > 1:114591/1‑56 TTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTC < 1:2208946/70‑1 TGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCT < 1:2608913/70‑1 GACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGc < 1:1384512/71‑2 ACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGc > 1:2582036/1‑69 ACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC < 1:1025963/46‑1 GTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATT < 1:3279513/46‑1 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGca < 1:3692900/70‑3 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGca < 1:1940185/70‑3 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGca < 1:255700/70‑3 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGca < 1:1096069/70‑3 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAA > 1:537912/1‑71 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAA > 1:1889928/1‑71 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAA > 1:3653171/1‑71 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAA > 1:2043020/1‑71 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAA > 1:3516058/1‑71 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAA > 1:2646013/1‑71 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT > 1:2013960/1‑42 CAACTCAAGTCTGACATAAATGACCGCTATGAGCA > 1:587610/1‑35 ACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAACC < 1:2931765/71‑1 CTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAA > 1:1767803/1‑68 CTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTA < 1:2245583/41‑1 ||||||||||| AGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/70130‑70061‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCAC > W3110S.gb/236044‑236113 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |