| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 70061 = | 50 (1.300) | 563 (18.940) +CGCGTACAACT |
85/76 | NT | 93.1% | intergenic (‑13/‑326) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 236044 = | 58 (1.510) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
Only 100 of 902 total aligned reads displayed.
TCGGTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCACC > W3110S.gb/235974‑236114 | tcctacctgacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactc < 1:3226229‑M2/1‑1 (MQ=255) cctacctgacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactc > 1:1209211‑M2/70‑70 (MQ=255) ctacctgacgctttttatcgcaactctctactgtttctccatacccgtttttttggactcgtacaactCaa < 1:1551395‑M2/3‑1 (MQ=255) acctgacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGt > 1:1049944‑M2/67‑71 (MQ=255) acctgacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGt > 1:2027065‑M2/67‑71 (MQ=255) cctgacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAg < 1:1490005‑M2/4‑1 (MQ=255) cctgacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTc > 1:3458701‑M2/66‑71 (MQ=255) cctgacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTc > 1:1401903‑M2/66‑71 (MQ=255) ctgacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCt < 1:267558‑M2/7‑1 (MQ=255) tgacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCt > 1:2800192‑M2/64‑70 (MQ=255) gacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGa > 1:1926839‑M2/63‑71 (MQ=255) acgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGa > 1:2429180‑M2/62‑70 (MQ=255) cgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGt > 1:2539862‑M2/61‑65 (MQ=255) cgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACa > 1:446469‑M2/61‑71 (MQ=255) gctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACa > 1:2952764‑M2/60‑70 (MQ=255) gctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACAt < 1:1777469‑M2/12‑1 (MQ=255) ctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATa < 1:704479‑M2/13‑1 (MQ=255) ctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATa < 1:2003190‑M2/13‑1 (MQ=255) ttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATaaa > 1:1443246‑M2/57‑71 (MQ=255) ttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATaaa > 1:3148772‑M2/57‑71 (MQ=255) tttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATaa < 1:2929502‑M2/14‑1 (MQ=255) tttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATaa < 1:750338‑M2/14‑1 (MQ=255) ttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAAt < 1:1474377‑M2/16‑1 (MQ=255) ttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAAt > 1:1661738‑M2/55‑70 (MQ=255) tatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactc < 1:2704834‑M2/1‑1 (MQ=255) tatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACAt > 1:3311551‑M2/54‑65 (MQ=255) tatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATg < 1:724560‑M2/17‑1 (MQ=255) cTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATaa < 1:504089/67‑1 (MQ=255) atcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGa > 1:1971520‑M2/53‑70 (MQ=255) tcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATg < 1:283011‑M2/17‑1 (MQ=255) gcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGc < 1:2464952‑M2/22‑1 (MQ=255) aaGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCt < 1:1418223/70‑1 (MQ=255) actctctactgtttctccatacccgtttttttggacgcgtacaactc < 1:2370153‑M2/1‑1 (MQ=255) ctctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGc < 1:670982‑M2/22‑1 (MQ=255) tctatactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCt < 1:3338031‑M2/23‑1 (MQ=255) ctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATaaa > 1:856363‑M2/44‑58 (MQ=255) ctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAg > 1:623022‑M2/44‑71 (MQ=255) tctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATaaa > 1:937398‑M2/43‑57 (MQ=255) tctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAg > 1:544606‑M2/43‑70 (MQ=255) ctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGAc < 1:2565345‑M2/19‑1 (MQ=255) tactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATaa < 1:3240150‑M2/14‑1 (MQ=255) tactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCAc > 1:1810789‑M2/41‑71 (MQ=255) tactgtttctacatacccgttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCa < 1:1595982‑M2/30‑1 (MQ=255) actgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACt > 1:779012‑M2/40‑71 (MQ=255) ctgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATa < 1:656284‑M2/13‑1 (MQ=255) ctgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAg < 1:592806‑M2/28‑1 (MQ=255) gtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATa > 1:3643028‑M2/37‑49 (MQ=255) gtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGc > 1:3552116‑M2/37‑70 (MQ=255) tttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGc < 1:418590‑M2/34‑1 (MQ=255) tttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCa > 1:1101594‑M2/36‑70 (MQ=255) ttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAt > 1:977807‑M2/35‑71 (MQ=255) tctccatacccgttttttttgacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAt < 1:2768448‑M2/37‑1 (MQ=255) tctccatacccgtttttttggacgcgtacaactCAAGTCTGACATaaa > 1:102953‑M2/34‑48 (MQ=255) tctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTAt > 1:3699918‑M2/34‑58 (MQ=255) tctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAt > 1:2887931‑M2/34‑70 (MQ=255) gACTTCCTGTAATTGAATCGAACTGTAAAACGACaa > 1:2597182/1‑36 (MQ=255) tccatacccgtttttttggacgcgtacaactCAAGTCTGa > 1:2060221‑M2/32‑40 (MQ=255) tccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAt > 1:2395867‑M2/32‑68 (MQ=255) tCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGc < 1:2165571/51‑1 (MQ=255) catacccgtttttttggacgcgtacaactCAAGTCTGACATAAAt > 1:3092319‑M2/30‑45 (MQ=255) catacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTacac > 1:950479‑M2/30‑71 (MQ=255) tacccgtttttttggacgcgtacaactCAAGTCTGACATaa < 1:2149777‑M2/14‑1 (MQ=255) tacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc > 1:3022024‑M2/28‑71 (MQ=255) tacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc < 1:482689‑M2/44‑1 (MQ=255) tacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc > 1:1319430‑M2/28‑71 (MQ=255) cccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGc < 1:3495489‑M2/22‑1 (MQ=255) cccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCaa > 1:3061884‑M2/26‑61 (MQ=255) cccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc < 1:1623883‑M2/44‑1 (MQ=255) cccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc > 1:2253686‑M2/26‑69 (MQ=255) cccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCa < 1:328285‑M2/46‑1 (MQ=255) ccgtttttttggacgcgtacaactCAAGTCTGACATaa < 1:2090833‑M2/14‑1 (MQ=255) tttttttggacgcgtacaactCAAGTCTGACATaa < 1:1910207‑M2/14‑1 (MQ=255) tttttttggacgcgtacaactCAAGTCTGACATAAATGACCGc < 1:833830‑M2/22‑1 (MQ=255) tttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGc < 1:2498572‑M2/34‑1 (MQ=255) tttttggacgcgtacaactCAAGTCTGACATAAAt > 1:1849986‑M2/20‑35 (MQ=255) tttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGt > 1:1713473‑M2/20‑71 (MQ=255) tttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGc < 1:1278310‑M2/34‑1 (MQ=255) ttggacgcgtacaactCAAGTCTGACATAAATGAc > 1:3668121‑M2/17‑35 (MQ=255) ttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtc < 1:2737139‑M2/54‑1 (MQ=255) tggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtct < 1:1743475‑M2/55‑1 (MQ=255) gacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTcgc > 1:1243230‑M2/14‑70 (MQ=255) acgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCtcgct < 1:2232830‑M2/59‑3 (MQ=255) gtacaactCAAGTCTGACATAAATGACCTCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCg > 1:327262‑M2/9‑71 (MQ=255) gtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGAt > 1:3425336‑M2/9‑57 (MQ=255) gtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGAt < 1:57822‑M2/49‑1 (MQ=255) tacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATc < 1:1353218‑M2/50‑1 (MQ=255) tacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACcgc < 1:3373760‑M2/64‑2 (MQ=255) tacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACcgc < 1:1887306‑M2/64‑2 (MQ=255) tacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACcgc < 1:3124910‑M2/64‑2 (MQ=255) tacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACcgc < 1:3520153‑M2/64‑2 (MQ=255) acaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACcgc > 1:3585621‑M2/7‑69 (MQ=255) acaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACcgc > 1:2304164‑M2/7‑69 (MQ=255) acaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACcgc > 1:3203729‑M2/7‑69 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTa > 1:101131‑M2/6‑65 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACcgc < 1:2989218‑M2/64‑2 (MQ=255) aCGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAac < 1:1156294/71‑1 (MQ=255) ctCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAt > 1:2332121‑M2/3‑39 (MQ=255) ctCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATc > 1:2629995‑M2/3‑52 (MQ=255) ctCAAGTCTGACATAAATGACCGCTATGAGAACTGCaa > 1:2126892‑M2/3‑38 (MQ=255) tCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAg < 1:882037‑M2/47‑1 (MQ=255) | TCGGTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCACC > W3110S.gb/235974‑236114 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |