| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 236798 | 24 (0.630) | 248 (14.410) +TTTAATATCAGTAAACCGGACATAACC |
48/44 | NT | 94.8% | coding (732/732 nt) | dnaQ | DNA polymerase III epsilon subunit |
| ? | W3110S.gb | 4124504 = | 37 (0.970) | intergenic (+106/‑1) | damX/dam | hypothetical protein/DNA adenine methylase | |||||
Only 100 of 865 total aligned reads displayed.
GATTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/236729‑236798‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGG > W3110S.gb/4124504‑4124573 ||||||||||||||||||||||||||| ATTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATT < 1:1211580/71‑1 TTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTT < 1:2381000/71‑1 TTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTT < 1:305871/71‑1 TTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTT < 1:3398607/71‑1 TTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTT < 1:311510/71‑1 AGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAAT < 1:2397784/70‑1 CTCATTAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATAT > 1:2599733/1‑70 CTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATA > 1:2263389/1‑69 TGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTA < 1:3637444/71‑1 TGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTA < 1:600168/71‑1 CCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGG < 1:436825/71‑1 CCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCG > 1:3659234/1‑70 CGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGG > 1:3230262/1‑70 CTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACA > 1:3701350/1‑70 TCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACAT > 1:2837504/1‑70 TCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACAT > 1:2777255/1‑70 TCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACAT > 1:5134/1‑70 TCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAAC > 1:963814/1‑63 TCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCA > 1:666537/1‑57 TCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATA > 1:2290497/1‑54 TCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATA < 1:691359/54‑1 CGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAA > 1:1775716/1‑71 ATCTGGTTCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTT < 1:2414470/47‑1 ATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACAT < 1:1115443/67‑1 TCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACC > 1:1497164/1‑70 TCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTT < 1:1154217/46‑1 CTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTA > 1:1548148/1‑46 GTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATG > 1:2859887/1‑70 GTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCC < 1:2513247/67‑1 GTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACC < 1:2758839/66‑1 CAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAG > 1:1291873/1‑70 CAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTA < 1:1611271/40‑1 AAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATG < 1:1695537/64‑1 AAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATAT < 1:1962064/41‑1 AAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAA > 1:3315446/1‑38 AGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAA < 1:947271/71‑1 AGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAA < 1:3564954/71‑1 AGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGA > 1:2466204/1‑52 AGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAA > 1:2880180/1‑47 GAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCG < 1:467494/49‑1 AAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCG > 1:482963/1‑71 AGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGC < 1:2646948/71‑1 AGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGC > 1:3600493/1‑71 GGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTT < 1:727131/71‑1 GGAAGTTGACTCTGGCGAGCATAATTTAATATCAGT > 1:2807176/1‑36 GTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTT < 1:831208/71‑1 GTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTT < 1:2087551/70‑1 GTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAA < 1:558041/57‑1 TTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG < 1:1452179/71‑1 TTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAA < 1:328452/56‑1 TGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTT < 1:862932/65‑1 TGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAA > 1:2522312/1‑43 GCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGA < 1:779730/70‑1 GCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG > 1:3454110/1‑69 GCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG > 1:2229433/1‑69 GCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGC > 1:1409651/1‑62 CTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGT < 1:3202236/71‑1 CTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAA < 1:1898437/54‑1 TCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTG > 1:1251532/1‑71 CTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGG > 1:3426058/1‑71 CTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGG > 1:2485395/1‑71 CTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAG > 1:2695434/1‑68 TGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGG > 1:1086733/1‑71 TGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGG > 1:354026/1‑71 TGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTG < 1:1341236/69‑1 TGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTT < 1:1186434/61‑1 GCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGG > 1:3147508/1‑69 GCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGG > 1:902883/1‑69 GCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGG < 1:1879614/69‑1 ATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGC < 1:2146120/71‑1 ATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAA > 1:3168088/1‑58 TAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGC > 1:1488503/1‑70 TAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGC > 1:2557738/1‑70 TAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGT < 1:137643/59‑1 ATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAG < 1:2336798/71‑1 ATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATC > 1:2029213/1‑42 TTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGG > 1:2953714/1‑63 TAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTA < 1:2012699/70‑1 AATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCA > 1:2190916/1‑58 ATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCC < 1:2666506/71‑1 TCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGC < 1:2920578/60‑1 TCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTT > 1:298043/1‑44 GTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCT < 1:3253884/71‑1 TAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTT < 1:335838/71‑1 TAAACCGGACATAACCCATGAAGAAAAATCGCGCT < 1:639817/35‑1 AAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAA > 1:3506898/1‑42 AACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGA > 1:1002496/1‑71 AACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGA > 1:1023397/1‑71 AACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGG > 1:1854187/1‑52 AACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG < 1:2716342/39‑1 ACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGAT < 1:3026039/71‑1 ACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTT < 1:1575727/63‑1 ACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTA > 1:2585253/1‑53 TAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCA > 1:1668983/1‑39 AACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAA > 1:2135647/1‑71 AACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGAT > 1:1046432/1‑65 AACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCA > 1:394076/1‑38 ACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAAC > 1:1800136/1‑71 ACCAATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGG > 1:1735650/1‑41 CCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACG > 1:2619095/1‑71 ||||||||||||||||||||||||||| GATTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/236729‑236798‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGG > W3110S.gb/4124504‑4124573 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |