New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb = 23679824 (0.630)248 (14.410)
+TTTAATATCAGTAAACCGGACATAACC
48/44 NT 94.8% coding (732/732 nt) dnaQ DNA polymerase III epsilon subunit
?W3110S.gb 4124504 = 37 (0.970)intergenic (+106/‑1) damX/dam hypothetical protein/DNA adenine methylase

Only 100 of 865 total aligned reads displayed.

GATTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/236729‑236798
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGG  >  W3110S.gb/4124504‑4124573
                                                                      |||||||||||||||||||||||||||                                                                      
 ATTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATT                                                                                                 <  1:1211580/71‑1
  TTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTT                                                                                                <  1:2381000/71‑1
  TTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTT                                                                                                <  1:305871/71‑1
  TTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTT                                                                                                <  1:3398607/71‑1
  TTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTT                                                                                                <  1:311510/71‑1
      AGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAAT                                                                                             <  1:2397784/70‑1
        CTCATTAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATAT                                                                                           >  1:2599733/1‑70
        CTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATA                                                                                            >  1:2263389/1‑69
            TGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTA                                                                                      <  1:3637444/71‑1
            TGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTA                                                                                      <  1:600168/71‑1
                  CCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGG                                                                                <  1:436825/71‑1
                  CCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCG                                                                                 >  1:3659234/1‑70
                   CGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGG                                                                                >  1:3230262/1‑70
                      CTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACA                                                                             >  1:3701350/1‑70
                       TCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACAT                                                                            >  1:2837504/1‑70
                       TCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACAT                                                                            >  1:2777255/1‑70
                       TCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACAT                                                                            >  1:5134/1‑70
                       TCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAAC                                                                                   >  1:963814/1‑63
                       TCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCA                                                                                         >  1:666537/1‑57
                       TCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATA                                                                                            >  1:2290497/1‑54
                       TCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATA                                                                                            <  1:691359/54‑1
                        CGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAA                                                                          >  1:1775716/1‑71
                          ATCTGGTTCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTT                                                                                                <  1:2414470/47‑1
                          ATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACAT                                                                            <  1:1115443/67‑1
                           TCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACC                                                                        >  1:1497164/1‑70
                           TCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTT                                                                                                <  1:1154217/46‑1
                            CTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTA                                                                                               >  1:1548148/1‑46
                               GTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATG                                                                    >  1:2859887/1‑70
                               GTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCC                                                                       <  1:2513247/67‑1
                               GTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACC                                                                        <  1:2758839/66‑1
                                  CAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAG                                                                 >  1:1291873/1‑70
                                  CAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTA                                                                                               <  1:1611271/40‑1
                                     AAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATG                                                                    <  1:1695537/64‑1
                                     AAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATAT                                                                                           <  1:1962064/41‑1
                                     AAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAA                                                                                              >  1:3315446/1‑38
                                      AGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAA                                                            <  1:947271/71‑1
                                      AGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAA                                                            <  1:3564954/71‑1
                                      AGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGA                                                                               >  1:2466204/1‑52
                                      AGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAA                                                                                    >  1:2880180/1‑47
                                       GAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCG                                                                                 <  1:467494/49‑1
                                         AAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCG                                                         >  1:482963/1‑71
                                          AGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGC                                                        <  1:2646948/71‑1
                                          AGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGC                                                        >  1:3600493/1‑71
                                              GGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTT                                                    <  1:727131/71‑1
                                              GGAAGTTGACTCTGGCGAGCATAATTTAATATCAGT                                                                                       >  1:2807176/1‑36
                                                  GTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTT                                                <  1:831208/71‑1
                                                  GTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTT                                                 <  1:2087551/70‑1
                                                  GTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAA                                                              <  1:558041/57‑1
                                                   TTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG                                               <  1:1452179/71‑1
                                                   TTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAA                                                              <  1:328452/56‑1
                                                    TGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTT                                                    <  1:862932/65‑1
                                                    TGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAA                                                                          >  1:2522312/1‑43
                                                     GCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGA                                              <  1:779730/70‑1
                                                     GCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG                                               >  1:3454110/1‑69
                                                     GCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG                                               >  1:2229433/1‑69
                                                     GCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGC                                                      >  1:1409651/1‑62
                                                       CTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGT                                           <  1:3202236/71‑1
                                                       CTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAA                                                            <  1:1898437/54‑1
                                                        TCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTG                                          >  1:1251532/1‑71
                                                         CTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGG                                         >  1:3426058/1‑71
                                                         CTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGG                                         >  1:2485395/1‑71
                                                         CTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAG                                            >  1:2695434/1‑68
                                                          TGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGG                                        >  1:1086733/1‑71
                                                          TGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGG                                        >  1:354026/1‑71
                                                          TGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTG                                          <  1:1341236/69‑1
                                                          TGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTT                                                  <  1:1186434/61‑1
                                                            GCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGG                                        >  1:3147508/1‑69
                                                            GCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGG                                        >  1:902883/1‑69
                                                            GCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGG                                        <  1:1879614/69‑1
                                                                  ATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGC                                <  1:2146120/71‑1
                                                                  ATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAA                                             >  1:3168088/1‑58
                                                                   TAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGC                                >  1:1488503/1‑70
                                                                   TAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGC                                >  1:2557738/1‑70
                                                                   TAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGT                                           <  1:137643/59‑1
                                                                     ATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAG                             <  1:2336798/71‑1
                                                                     ATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATC                                                          >  1:2029213/1‑42
                                                                       TTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGG                                   >  1:2953714/1‑63
                                                                        TAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTA                           <  1:2012699/70‑1
                                                                         AATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCA                                      >  1:2190916/1‑58
                                                                          ATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCC                        <  1:2666506/71‑1
                                                                             TCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGC                                <  1:2920578/60‑1
                                                                             TCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTT                                                >  1:298043/1‑44
                                                                                GTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCT                  <  1:3253884/71‑1
                                                                                 TAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTT                 <  1:335838/71‑1
                                                                                 TAAACCGGACATAACCCATGAAGAAAAATCGCGCT                                                     <  1:639817/35‑1
                                                                                  AAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAA                                             >  1:3506898/1‑42
                                                                                   AACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGA               >  1:1002496/1‑71
                                                                                   AACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGA               >  1:1023397/1‑71
                                                                                   AACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGG                                  >  1:1854187/1‑52
                                                                                   AACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG                                               <  1:2716342/39‑1
                                                                                    ACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGAT              <  1:3026039/71‑1
                                                                                         ACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTT                 <  1:1575727/63‑1
                                                                                         ACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTA                           >  1:2585253/1‑53
                                                                                            TAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCA                                      >  1:1668983/1‑39
                                                                                             AACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAA     >  1:2135647/1‑71
                                                                                             AACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGAT           >  1:1046432/1‑65
                                                                                             AACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCA                                      >  1:394076/1‑38
                                                                                              ACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAAC    >  1:1800136/1‑71
                                                                                              ACCAATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGG                                  >  1:1735650/1‑41
                                                                                               CCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACG   >  1:2619095/1‑71
                                                                      |||||||||||||||||||||||||||                                                                      
GATTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/236729‑236798
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGG  >  W3110S.gb/4124504‑4124573

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.