| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 236798 | 24 (0.630) | 248 (14.410) +TTTAATATCAGTAAACCGGACATAACC |
48/44 | NT | 94.8% | coding (732/732 nt) | dnaQ | DNA polymerase III epsilon subunit |
| ? | W3110S.gb | 4124504 = | 37 (0.970) | intergenic (+106/‑1) | damX/dam | hypothetical protein/DNA adenine methylase | |||||
Only 100 of 648 total aligned reads displayed.
TGCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGGC > W3110S.gb/4124438‑4124574 | gtgcagaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATg < 1:2835410‑M2/4‑1 (MQ=255) aaGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGaaa > 1:1879137/1‑70 (MQ=255) agaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaaaa < 1:2393623‑M2/12‑1 (MQ=255) gaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaaaa < 1:1207922‑M2/12‑1 (MQ=255) gaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAAt < 1:2713366‑M2/13‑1 (MQ=255) aaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATcg > 1:482963‑M2/57‑71 (MQ=255) aaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATc > 1:3410667‑M2/57‑70 (MQ=255) aggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATcgc > 1:2753197‑M2/56‑71 (MQ=255) cggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaa < 1:1797783‑M2/10‑1 (MQ=255) ggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtt < 1:727131‑M2/20‑1 (MQ=255) gaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaa < 1:3082836‑M2/10‑1 (MQ=255) gaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCttt < 1:9756‑M2/21‑1 (MQ=255) aagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtttt < 1:2521220‑M2/22‑1 (MQ=255) gttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtttttt < 1:831208‑M2/24‑1 (MQ=255) gttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtttttt < 1:415828‑M2/24‑1 (MQ=255) ttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaa < 1:1045332‑M2/10‑1 (MQ=255) ttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:3643915‑M2/25‑1 (MQ=255) ttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:603473‑M2/25‑1 (MQ=255) tgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtt < 1:862932‑M2/20‑1 (MQ=255) gcctctggcgagcataatttaatatcagtaaacctgacataaccCATGAAGAAAAATCGCCCTTTTTTg > 1:1893995‑M2/45‑69 (MQ=255) gcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCgcgc > 1:1409651‑M2/45‑62 (MQ=255) gcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg > 1:1100831‑M2/45‑69 (MQ=255) gcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg > 1:2685695‑M2/45‑69 (MQ=255) gcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGa < 1:2470180‑M2/26‑1 (MQ=255) gcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGa < 1:504913‑M2/26‑1 (MQ=255) cctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCTCTTTTTTGaa < 1:1835736‑M2/27‑1 (MQ=255) ctctggcgagcataatttaatatcagtaaaccgggcataaccCATGAAGAAAAATCGCGCTTTTTTGAAGt < 1:1183492‑M2/29‑1 (MQ=255) ctctggcgagcataatttaatatcagtaaaccggacataaccCATgaa < 1:1599416‑M2/6‑1 (MQ=255) ctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGt < 1:35201‑M2/29‑1 (MQ=255) tctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaaaa < 1:78318‑M2/12‑1 (MQ=255) tctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTg > 1:1251532‑M2/42‑71 (MQ=255) tggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGa < 1:3667385‑M2/26‑1 (MQ=255) tggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTggg > 1:1086733‑M2/40‑71 (MQ=255) tggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTg < 1:2553135‑M2/30‑1 (MQ=255) gcgagcataatttaatatcagtaaaccggacataaccCa < 1:325588‑M2/2‑1 (MQ=255) gcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTggg < 1:1715518‑M2/32‑1 (MQ=255) gcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTggg > 1:3147508‑M2/38‑69 (MQ=255) cgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCttt < 1:1769295‑M2/21‑1 (MQ=255) cgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAg < 1:89579‑M2/35‑1 (MQ=255) gagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAgg < 1:1456531‑M2/36‑1 (MQ=255) ataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGc < 1:2146120‑M2/40‑1 (MQ=255) ataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGc < 1:2137176‑M2/40‑1 (MQ=255) ataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGc < 1:2794693‑M2/40‑1 (MQ=255) ataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGc < 1:3442140‑M2/40‑1 (MQ=255) taatttaatatcagtaaaccggacataaccCATGAAGAAAAATc < 1:1556602‑M2/14‑1 (MQ=255) taatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:2954912‑M2/25‑1 (MQ=255) taatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGc > 1:1488503‑M2/31‑70 (MQ=255) atttaatatcagtaaaccggacataaccCATGAAGaaaaa > 1:463717‑M2/29‑40 (MQ=255) atttaatatcagtaaaccggacataaccCATGAAGAAAAAt > 1:3197153‑M2/29‑41 (MQ=255) atttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGaa > 1:3171216‑M2/29‑55 (MQ=255) atttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCa > 1:546483‑M2/29‑62 (MQ=255) atttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCaa < 1:2515091‑M2/42‑1 (MQ=255) tttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:321423‑M2/25‑1 (MQ=255) tttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGc < 1:3020290‑M2/33‑1 (MQ=255) ttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGaa > 1:2025293‑M2/27‑53 (MQ=255) ttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAggg > 1:2247259‑M2/27‑63 (MQ=255) aatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCttttt > 1:167856‑M2/25‑47 (MQ=255) aatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCa > 1:2190916‑M2/25‑58 (MQ=255) atatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATc < 1:388136‑M2/47‑1 (MQ=255) tcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGa < 1:2648311‑M2/26‑1 (MQ=255) tcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGc < 1:2920578‑M2/40‑1 (MQ=255) tcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATcccc < 1:697108‑M2/50‑1 (MQ=255) tcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCt > 1:932450‑M2/21‑71 (MQ=255) cagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTg > 1:955847‑M2/20‑71 (MQ=255) agtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGc > 1:128666‑M2/19‑58 (MQ=255) agtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGc > 1:3563121‑M2/19‑71 (MQ=255) agtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGc > 1:619493‑M2/19‑71 (MQ=255) gtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGa < 1:1931803‑M2/26‑1 (MQ=255) gtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCa < 1:3600367‑M2/34‑1 (MQ=255) taaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTggg < 1:1745997‑M2/32‑1 (MQ=255) taaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAg < 1:2856575‑M2/35‑1 (MQ=255) taaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGAGCAGGGGGCAAGTATCCCCTGCtt < 1:2606573‑M2/55‑1 (MQ=255) aaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGaa > 1:3506898‑M2/16‑42 (MQ=255) aaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCtt > 1:2113711‑M2/16‑70 (MQ=255) aaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCtt > 1:3317133‑M2/16‑70 (MQ=255) aaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCtt > 1:1021507‑M2/16‑70 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCttttt > 1:2665578‑M2/15‑37 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAg > 1:2217833‑M2/15‑42 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCaa > 1:1372800‑M2/15‑56 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtga > 1:1002496‑M2/15‑71 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtga > 1:2372374‑M2/15‑71 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtga > 1:3034009‑M2/15‑71 (MQ=255) ttagttagTCAGCATGAAGAAAAATCGCGCTTTTTTGAAg > 1:2996191/1‑40 (MQ=255) ggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgatga > 1:2877758‑M2/11‑70 (MQ=255) gacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGTGGGCAAGTAt > 1:2289313‑M2/10‑55 (MQ=255) acataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTa > 1:2585253‑M2/9‑53 (MQ=255) agtCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATc > 1:1982741/1‑53 (MQ=255) taaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTa < 1:1338476‑M2/65‑1 (MQ=255) gtCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTa < 1:1640397/70‑1 (MQ=255) aaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTa > 1:1140709‑M2/5‑49 (MQ=255) aaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTaaa > 1:2077280‑M2/5‑71 (MQ=255) aaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTaaa > 1:2407228‑M2/5‑71 (MQ=255) aaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTaaa > 1:3375915‑M2/5‑71 (MQ=255) aaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTaaa > 1:2624455‑M2/5‑71 (MQ=255) accCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAggg > 1:2773549‑M2/4‑40 (MQ=255) accCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAAc > 1:1506755‑M2/4‑71 (MQ=255) ccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGata > 1:2342182‑M2/3‑64 (MQ=255) aGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACg > 1:3292028/1‑71 (MQ=255) cCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgatga < 1:671101‑M2/60‑1 (MQ=255) cATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGGc < 1:2487323/71‑1 (MQ=255) | TGCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGGC > W3110S.gb/4124438‑4124574 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |