New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb = 71395441 (1.070)713 (18.600) 97/98 NT 93.8% coding (546/546 nt) seqA regulatory protein for replication initiation
?W3110S.gb 2809398 = 53 (1.380)intergenic (+63/‑28) ygaH/mprA predicted inner membrane protein/DNA‑binding transcriptional regulator

Only 100 of 861 total aligned reads displayed.

GATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/713885‑713954
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTT  >  W3110S.gb/2809398‑2809467
                                                                                                                                            
 ATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACG                                                                      >  1:1115349/1‑71
 ATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACG                                                                      >  1:1867228/1‑71
  TCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGG                                                                     >  1:1959728/1‑71
  TCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGG                                                                     <  1:67175/71‑1
  TCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGG                                                                     >  1:3349078/1‑71
    GAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCT                                                                   >  1:3304604/1‑71
    GAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGC                                                                    <  1:862668/70‑1
      ACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGA                                                                 <  1:1589963/71‑1
       CACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGA                                                                 >  1:1568333/1‑70
         CATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAAT                                                              <  1:254635/71‑1
         CATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAAT                                                              >  1:1384231/1‑71
         CATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAAT                                                              >  1:77812/1‑71
          ATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATT                                                             <  1:2997281/71‑1
          ATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATT                                                             <  1:1681126/71‑1
          ATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAAT                                                              >  1:2069694/1‑70
          ATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAAT                                                              >  1:133122/1‑70
           TCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTA                                                            <  1:540265/71‑1
             ATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAAT                                                          <  1:1220920/71‑1
             ATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAAT                                                          >  1:3329292/1‑71
               GCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAAT                                                          >  1:1486918/1‑69
                   TCGATGCAATTCCCGTCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGA                                                                 <  1:2799574/58‑1
                   TCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGT                                                     <  1:3261282/70‑1
                   TCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGT                                                     >  1:3555900/1‑70
                   TCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGT                                                     >  1:453383/1‑70
                   TCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTA                                                            <  1:2389762/63‑1
                   TCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGA                                                                 <  1:794876/58‑1
                    CGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCA                                                   >  1:3131124/1‑71
                    CGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGA                                                        >  1:1296629/1‑66
                    CGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAA                                                           >  1:2971806/1‑63
                     GATGCATTTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCA                                                   >  1:4986/1‑70
                     GATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCA                                                   <  1:2819049/70‑1
                     GATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAA                                                           >  1:1412456/1‑62
                       TGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGA                                                        >  1:3376718/1‑63
                        GCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACC                                               >  1:977449/1‑71
                          AATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCA                                             <  1:1071410/71‑1
                          AATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCA                                             <  1:1758489/71‑1
                          AATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGT                                                     <  1:394151/63‑1
                           ATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTAATACCCAA                                            <  1:961239/71‑1
                           ATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGA                                                                 <  1:3491512/50‑1
                            TTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAA                                           >  1:2655000/1‑71
                            TTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCA                                             <  1:2253778/69‑1
                            TTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATG                                                         <  1:315453/57‑1
                              CCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATG                                         >  1:1801539/1‑71
                              CCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTC                                                    >  1:428701/1‑60
                              CCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAAT                                                              >  1:2850243/1‑50
                                CGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGA                                       <  1:1000550/71‑1
                                 GGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATG                                                         >  1:1623019/1‑52
                                  GCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATA                                     <  1:3225291/71‑1
                                   CGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGA                                                                 <  1:886879/42‑1
                                    GGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAA                                                           >  1:2143028/1‑47
                                      AATTGATTGAGATGGTTTGCGGAACTATCTAACGGC                                                                    >  1:1835166/1‑36
                                      AATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTC                                 >  1:25679/1‑71
                                       ATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCG                                <  1:2503567/71‑1
                                       ATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCG                                <  1:2191235/71‑1
                                       ATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGA                                                        <  1:1023553/47‑1
                                       ATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAAT                                                              >  1:834545/1‑41
                                        TTGATTGAGAATGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATG                                         <  1:2745438/61‑1
                                        TTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGT                               >  1:1527156/1‑71
                                        TTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGT                               >  1:2448285/1‑71
                                        TTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCG                                <  1:3446822/70‑1
                                        TTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCG                                <  1:2281822/70‑1
                                        TTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAA                                                           >  1:3638993/1‑43
                                          GATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT                              <  1:1176874/70‑1
                                          GATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT                              <  1:2167751/70‑1
                                          GATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT                              <  1:3171809/70‑1
                                          GATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT                              <  1:1724666/70‑1
                                          GATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT                              >  1:628761/1‑70
                                          GATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT                              <  1:3044102/70‑1
                                          GATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCA                                                   >  1:3527198/1‑49
                                          GATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAA                                                           >  1:3582318/1‑41
                                            TTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAAT                                                          <  1:234727/40‑1
                                              GAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAG                                                       >  1:473869/1‑41
                                              GAGAAGGTTT‑‑GGAACTATCTAACGGCTGAAATTAATGAGGT                                                     <  1:1988875/41‑1
                                                GAAGGTTTGCGGAACTATCTAACGGCTGAAATTAAT                                                          <  1:2955321/36‑1
                                                GAAGGCTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCC                       <  1:2875613/71‑1
                                                 AAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCA                      <  1:2008999/71‑1
                                                  AGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAG                                                       >  1:2686976/1‑37
                                                    GTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATT                    >  1:3710417/1‑70
                                                     TTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCAAAATGGATAGTTCGTTTACGCCCATTG                   >  1:2202041/1‑70
                                                       TGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAA                 >  1:592193/1‑70
                                                         CGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAA              <  1:2486018/71‑1
                                                         CGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACA               <  1:189217/70‑1
                                                         CGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACA               <  1:3069661/70‑1
                                                         CGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTAAGCCCATTGAACAA              <  1:2602024/71‑1
                                                         CGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAA                                           >  1:3685804/1‑42
                                                           GAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGA                  >  1:3212219/1‑65
                                                              CTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGC          >  1:1929433/1‑70
                                                              CTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGC          >  1:2309274/1‑70
                                                               TATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT                              <  1:2928694/49‑1
                                                                 TCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTA                            >  1:947466/1‑49
                                                                 TCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT                              <  1:1138853/47‑1
                                                                 TCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGA                                       >  1:136933/1‑38
                                                                   TAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAAT    >  1:1659428/1‑71
                                                                   TAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAA     >  1:3408383/1‑70
                                                                   TAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAA       <  1:901862/68‑1
                                                                   TAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTA                            >  1:745776/1‑47
                                                                   TAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTA                            >  1:144858/1‑47
                                                                   TAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTA                            >  1:711162/1‑47
                                                                     ACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATT   <  1:1268347/70‑1
                                                                     ACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATT   <  1:1692976/70‑1
                                                                                                                                            
GATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/713885‑713954
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTT  >  W3110S.gb/2809398‑2809467

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.