| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2858376 = | 43 (1.120) | 4 (0.120) | 4/82 | NT | 10.4% | intergenic (+66/‑40) | mutS/pphB | methyl‑directed mismatch repair protein/serine/threonine‑specific protein phosphatase 2 |
| ? | W3110S.gb | 2858410 = | 33 (1.030) | intergenic (+100/‑6) | mutS/pphB | methyl‑directed mismatch repair protein/serine/threonine‑specific protein phosphatase 2 | |||||
TGATGGGCATTGATTTTTTGATAGCGTGTAGATGGCATGGTTTTACCCTGTAAAATAAGCTTTCCTATTATACAGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/2858453‑2858376‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacagggtAAAACCATGCCATCTACACGCTATCAAAAAATCAATGCCCATCACTATCGCCATATATGGGTCGT > W3110S.gb/2858410‑2858474 TGATGGGCATTGATTTTTTGATAGCGTGTAGATGGCATGGTTTTACCCTGTAAAATAAGCTTTCCTATTAT < 1:1898586/71‑1 TGGGCATTGATTTTTTGATAGCGTGTAGATGGCATGGTTTTACCCTGTAAAATAAGCTTTCCTATTATACA < 1:1961919/71‑1 CATTGATTTTTTGATAGCGTGTAGATGGCATGGTTTTACCCTGTAAAATAAGCTTTCCTATTATACAGGGT < 1:2112475/71‑1 TGAGTTTTTGATAGCGTGTAGATGGCATGGTTTTACCCTGTAAAATAAGCTATCCTATTATACAGGG > 1:1753720/1‑67 TTTTTGATAGCGTGTAGATGGCATGGTTTTACCCTGTAAAATAAGCTTTCCTATTATA > 1:2178690/1‑58 TGTAGATGGCATGGTTTTACCCTGTAAAATAAGCTTTCCTATTAT < 1:1407495/45‑1 TAGATGGCATGGTTTTACCCTGTAAAATAAGCTTTCCTATTAT < 1:513761/43‑1 TGTAAAATAAGCTTTCCTATTATACAGGGTAAAACCATGCCATCTACACGCTATCAAAA < 1:240286/59‑1 TAAAATAAGCTTTCCTATTATACAGGGTAAAACCATGCCATCTACACGCTATCAAAAAA > 1:432916/1‑59 AAATAAGCTTTCCTATTATACAGGGTAAAACCATGCC < 1:1690882/37‑1 TAAGCTTTCCTATTATACAGGGTAAAACCATGCCATCTACACGCTATCAAAAAATCAATG < 1:3048016/60‑1 AGGGTAAAACCATGCCATCTACACGCTATCAAAAAATCAATGCCCATCACTATCGCCATA < 1:668554/60‑1 GGTAAAACCATGCCATCTACACGCTATCAAAAAAT < 1:682258/35‑1 TAAAACCATGCCATCTACACGCTATCAAAAAATCAATGCCCATCACTATCGCCATATATGGGTCGT < 1:272295/66‑1 TAAAACCATGCCATCTACACGCTATCAAAAAATCAATGCCCATCACTATCGCCATA < 1:620057/56‑1 TAAAACCATGCCATCTACACGCTATCAAAAAATCAATGCCCAT < 1:2177756/43‑1 TAAAACCATGCCATCTACACGCTATCAAAAAATCAATGCC < 1:1562666/40‑1 TGATGGGCATTGATTTTTTGATAGCGTGTAGATGGCATGGTTTTACCCTGTAAAATAAGCTTTCCTATTATACAGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/2858453‑2858376‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacagggtAAAACCATGCCATCTACACGCTATCAAAAAATCAATGCCCATCACTATCGCCATATATGGGTCGT > W3110S.gb/2858410‑2858474 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |