| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2858376 = | 43 (1.120) | 4 (0.120) | 4/82 | NT | 10.4% | intergenic (+66/‑40) | mutS/pphB | methyl‑directed mismatch repair protein/serine/threonine‑specific protein phosphatase 2 |
| ? | W3110S.gb | 2858410 = | 33 (1.030) | intergenic (+100/‑6) | mutS/pphB | methyl‑directed mismatch repair protein/serine/threonine‑specific protein phosphatase 2 | |||||
GGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCATGCCATCTACACGCTATCAAAAAATCAATGCCCATCACTATCGCCATATATGGGTCGTTGGTGA > W3110S.gb/2858340‑2858480 | ggAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTa < 1:602278/71‑1 (MQ=255) aaTATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTaaa < 1:2030109/71‑1 (MQ=255) aaTATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTaa > 1:314770/1‑70 (MQ=255) ttAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAAcc < 1:549047/70‑1 (MQ=255) ttAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCa > 1:3522352/1‑71 (MQ=255) ttAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCa > 1:696927/1‑71 (MQ=255) tAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCa < 1:2540491/70‑1 (MQ=255) aaCGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCATg > 1:1528753/1‑71 (MQ=255) aCAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCATGCCAt > 1:1999044/1‑71 (MQ=255) aCTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCATGCCATCTa < 1:2758933/71‑1 (MQ=255) cTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCATGCCATCTa > 1:2913000/1‑70 (MQ=255) gACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCATGCCATCTacac > 1:525311/1‑71 (MQ=255) aCGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCATGCCATCTACACg > 1:3078887/1‑71 (MQ=255) cGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCATGCCATCTACACGc > 1:1637473/1‑71 (MQ=255) ataaaataaaAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCATGc > 1:1443247/1‑57 (MQ=255) taaaaACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCATGCCATCt < 1:798335/56‑1 (MQ=255) taaaaACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCATGCCATCTACACGCTATCaaaa > 1:1593014/1‑70 (MQ=255) aaaaCACCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCATGCCATCTACACGCTATCAAAAAAt < 1:886537/71‑1 (MQ=255) aaaCACCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCATGCCATCTACACGCTATCAAAAAATc < 1:885973/71‑1 (MQ=255) aaaCACCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCATGCCATCTACACGCTATCAAAAAATc < 1:2176766/71‑1 (MQ=255) cacCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCATGCCATCTACACGCTATCAAAAAATCAAt < 1:451037/71‑1 (MQ=255) ACCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCATGCCATCTACACGCTATCAAAAAATCAATg < 1:2112475‑M1/71‑1 (MQ=255) CCCTGTATAATAGGATAGCTTATTTTACAGGGTAAAACCATGCCATCTACACGCTATCAAAAACTCa > 1:1753720‑M1/1‑67 (MQ=255) tgtaaaataagctttcctattatacagggtAAAACCATGCCATCTACACGCTATCaaaa < 1:240286‑M2/29‑1 (MQ=255) TGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCATGCCATCTACACGCTATCAAAAAATCAATGCCCa < 1:1961919‑M1/71‑1 (MQ=255) taaaataagctttcctattatacagggtAAAACCATGCCATCTACACGCTATCaaaaaa > 1:432916‑M2/29‑59 (MQ=255) TATAATAGGAAAGCTTATTTTACAGGGTAAAACCATGCCATCTACACGCTATCaaaaa > 1:2178690‑M1/1‑58 (MQ=255) ATAATAGGAAAGCTTATTTTACAGGGTAAAACCATGCCATCTaca < 1:1407495‑M1/45‑1 (MQ=255) ATAATAGGAAAGCTTATTTTACAGGGTAAAACCATGCCATCTa < 1:513761‑M1/43‑1 (MQ=255) ATAATAGGAAAGCTTATTTTACAGGGTAAAACCATGCCATCTACACGCTATCAAAAAATCAATGCCCATCa < 1:1898586‑M1/71‑1 (MQ=255) taataGGAAAGCTTATTTTACAGGGTAAAACCATGCCATCTACACGCTATCAAAAAATc < 1:61411/59‑1 (MQ=255) taataGGAAAGCTTATTTTACAGGGTAAAACCATGCCATCTACACGCTATCAAAAAATCa > 1:755381/1‑60 (MQ=255) aaataagctttcctattatacagggtAAAACCATGcc < 1:1690882‑M2/11‑1 (MQ=255) ataGGAAAGCTTATTTTACAGGGTAAAACCATGCCATCTACACGCTATCAAAAAATCaa > 1:2616801/1‑59 (MQ=255) ataGGAAAGCTTATTTTACAGGGTAAAACCATGCCATCTACACGCTATCAAAAAATCAATGCCCATCACTa < 1:145891/71‑1 (MQ=255) taagctttcctattatacagggtAAAACCATGCCATCTACACGCTATCAAAAAATCAATg < 1:3048016‑M2/37‑1 (MQ=255) aGGAAAGCTTATTTTACAGGGTAAAACCATGCCATCTacac < 1:1488004/41‑1 (MQ=255) gAAAGCTTATTTTACAGGGTAAAACCATGCCATCTACACGCTATCaaaa < 1:3132343/49‑1 (MQ=255) gAAAGCTTATTTTACAGGGTAAAACCATGCCATCTACACGCTATCAAAAAATCAATGCCCATCACTATCGc < 1:1106123/71‑1 (MQ=255) aaaGCTTATTTTACAGGGTAAAACCATGCCATCTa > 1:580814/1‑35 (MQ=255) aaaGCTTATTTTACAGGGTAAAACCATGCCATCTACACGCTATCAAAAAATCAATGCCCATCACTATCGc > 1:369822/1‑70 (MQ=255) aaaGCTTATTTTACAGGGTAAAACCATGCCATCTACACGCTATCAAAAAATCAATGCCCATCACTATCGc > 1:930580/1‑70 (MQ=255) cTTATTTTACATGGTAAAACCATGCCATCTACACGCTATCAAAAAATCAATGCCCATCACTATCGCCata > 1:546946/1‑70 (MQ=255) cTTATTTTACAGGGTAAAACCATGCCATCTACACGCTATCAAAAAATc < 1:3394954/48‑1 (MQ=255) cTTATTTTACAGGGTAAAACCATGCCATCTACACGCTATCAAAAAATc < 1:3149794/48‑1 (MQ=255) cTTATTTTACAGGGTAAAACCATGCCATCTACACGCTATCAAAAAATc < 1:2198349/48‑1 (MQ=255) cTTATTTTACAGGGTAAAACCATGCCATCTACACGCTATCAAAAAATCAATGCCCATCACTATCGCCatat < 1:1684864/71‑1 (MQ=255) tATTTTACAGGGTAAAACCATGCCATCTACACGCTATCAAAAAATCAATGCCCATCACt < 1:2652585/59‑1 (MQ=255) aTTTTACAGGGTAAAACCATGCCATCTACACGCTATCAAAAAATCAATGCCCATCACTATCGCCatatat < 1:1189665/70‑1 (MQ=255) aTTTTACAGGGTAAAACCATGCCATCTACACGCTATCAAAAAATCAATGCCCATCACTATCGCCatata < 1:84246/69‑1 (MQ=255) ttttACAGGGTAAAACCATGCCATCTACACGCTATCAAAAAATCAATGCCCATCACTATCGCCATATATgg > 1:1838701/1‑71 (MQ=255) agggtAAAACCATGCCATCTACACGCTATCAAAAAATCAATGCCCATCACTATCGCCata < 1:668554‑M2/55‑1 (MQ=255) ggtAAAACCATGCCATCTACACGCTATCAAAAAAt < 1:682258‑M2/32‑1 (MQ=255) tAAAACCATGCCATCTACACGCTATCAAAAAATCAATGcc < 1:1562666‑M2/39‑1 (MQ=255) tAAAACCATGCCATCTACACGCTATCAAAAAATCAATGCCCAt < 1:2177756‑M2/42‑1 (MQ=255) tAAAACCATGCCATCTACACGCTATCAAAAAATCAATGCCCATCACTATCGCCata < 1:620057‑M2/55‑1 (MQ=255) tAAAACCATGCCATCTACACGCTATCAAAAAATCAATGCCCATCACTATCGCCATATATGGGTCGt < 1:272295‑M2/65‑1 (MQ=255) aaaaCCATGCCATCTACACGCTATCAAAAAATCAATGCCCATCACTATCGCCATATATGGGTCGTTGGTGa > 1:3373726/1‑71 (MQ=255) aaaaCCATGCCATCTACACGCTATCAAAAAATCAATGCCCATCACTATCGCCATATATGGGTCGTTGGTGa > 1:1637456/1‑71 (MQ=255) aaaaCCATGCCATCTACACGCTATCAAAAAATCAATGCCCATCACTATCGCCATATATGGGTCGTTGGTGa > 1:1545882/1‑71 (MQ=255) aaaaCCATGCCATCTACACGCTATCAAAAAATCAATGCCCATCACTATCGCCATATATGGGTCGTTGGTGa > 1:1541583/1‑71 (MQ=255) | GGAATATTAACGACAACTGACGAATAAAATAAAAACACCCTGTATAATAGGAAAGCTTATTTTACAGGGTAAAACCATGCCATCTACACGCTATCAAAAAATCAATGCCCATCACTATCGCCATATATGGGTCGTTGGTGA > W3110S.gb/2858340‑2858480 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |