| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 1131120 | 40 (1.040) | 15 (0.520) +GTAGCCGGACTT |
4/74 | NT | 40.7% | coding (288/417 nt) | flgN | export chaperone for FlgK and FlgL |
| ? | W3110S.gb | = 4641028 | 18 (0.470) | coding (340/690 nt) | creB | DNA‑binding response regulator in two‑component regulatory system with CreC | |||||
CTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACAT > W3110S.gb/4640959‑4641096 | cTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAg < 1:835911/71‑1 (MQ=255) gAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCtt < 1:3038181/71‑1 (MQ=255) gAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCt < 1:1836015/70‑1 (MQ=255) gAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCt < 1:2010414/70‑1 (MQ=255) aaaTTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCtt > 1:2012962/1‑70 (MQ=255) aaaTTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTa < 1:3584718/71‑1 (MQ=255) aaTTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAg < 1:2944359/57‑1 (MQ=255) aTTGGTGCTGACGACTACGTGGCTAAACCTTTTTCACCCCGCGAAGTGTGCGCCAggg > 1:1895045/1‑58 (MQ=255) aTTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAggg > 1:3294854/1‑58 (MQ=255) ggTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCg > 1:2451134/1‑71 (MQ=255) gTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGAGAAGTGTGCGCCAGGGTGCGCACCTTACTGCg < 1:304539/70‑1 (MQ=255) tGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTc < 1:1035218/71‑1 (MQ=255) cTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCgg > 1:3296035/1‑71 (MQ=255) acTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAg < 1:1201988/43‑1 (MQ=255) acTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTgaag < 1:3627288/71‑1 (MQ=255) cGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTgc > 1:2614124/1‑44 (MQ=255) tGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTa < 1:2587804/50‑1 (MQ=255) aaaCCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTgaaga > 1:2902625/1‑61 (MQ=255) gTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGcc < 1:559024/69‑1 (MQ=255) ttttCACCCCGCGAAGTGTGCGCCAGGGTGTGCACCtt < 1:3547567/38‑1 (MQ=255) cccGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGt < 1:3510679/51‑1 (MQ=255) ttgaaGTGTGCGCCAaagtccggctacactggaaggacagatt > 1:2706848‑M2/3‑15 (MQ=255) ttgaaGTGTGCGCCAaagtccggctacactggaaggacagatt > 1:2204005‑M2/3‑15 (MQ=255) ttgaaGTGTGCGCCAaagtccggctacactggaaggacagat > 1:601261‑M2/3‑15 (MQ=255) ttgaaGTGTGCGCCAaagtccggctacactggaaggacagat > 1:1013110‑M2/3‑15 (MQ=255) ttgaaGTGTGCGCCAaagtccggctacactggaaggacaga > 1:1068036‑M2/3‑15 (MQ=255) cgAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCg < 1:260414/52‑1 (MQ=255) cgAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTATCGACGCCGtct > 1:2311796/1‑61 (MQ=255) gAAGTGTGCGCCAaagtccggctacactggaaggacagattt < 1:724590‑M2/42‑30 (MQ=255) gAAGTGTGCGCCAaagtccggctacactggaaggacagattt < 1:86258‑M2/42‑30 (MQ=255) gAAGTGTGCGCCAaagtccggctacactggaaggacagat > 1:3678339‑M2/1‑13 (MQ=255) gAAGTGTGCGCCAaagtccggctacactggaaggacaga < 1:50172‑M2/39‑27 (MQ=255) gAAGTGTGCGCCAaagtccggctacactggaaggacaga > 1:2081041‑M2/1‑13 (MQ=255) gAAGTGTGCGCCAaagtccggctacactggaaggacaga > 1:1007620‑M2/1‑13 (MQ=255) aaGTGTGCGCCAaagtccggctacactggaaggacaga < 1:2539455‑M2/38‑27 (MQ=255) gtgCGCCAaagtccggctacactggaaggacagattt < 1:3490220‑M2/37‑30 (MQ=255) tgCGCCAaagtccggctacactggaaggacagattt < 1:2757175‑M2/36‑30 (MQ=255) tgCGCCAaagtccggctacactggaaggacagattt > 1:2275823‑M2/1‑7 (MQ=255) cgcCAGGGTGCGCACCTTACTGCGTCGGGTgaagaa > 1:3601242/1‑36 (MQ=255) ccAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACAt < 1:3617676/71‑1 (MQ=255) cAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATc > 1:1196396/1‑58 (MQ=255) | CTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACAT > W3110S.gb/4640959‑4641096 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |