| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 71265 | 46 (1.150) | 267 (9.300) +AGGGTCCCTAAGTC |
66/72 | NT | 92.5% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 3464879 = | 14 (0.350) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
Only 100 of 475 total aligned reads displayed.
GGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/71196‑71265‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGAT > W3110S.gb/3464879‑3464926 |||||||||||||| CCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTTTCATAAAGG < 1:295732/71‑1 CCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGG > 1:1802391/1‑71 AGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGT > 1:2482661/1‑71 GCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTC > 1:1074486/1‑71 GCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTC < 1:278325/71‑1 CCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCC > 1:2054305/1‑71 CGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTGATAAAGGGTCCC > 1:2798558/1‑70 CGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCT < 1:1662558/71‑1 CGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCC > 1:3553080/1‑70 CGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCC > 1:3315368/1‑70 AGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAA < 1:3780038/71‑1 CGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAG > 1:3802242/1‑70 AGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAA > 1:3069415/1‑57 ttcCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAA < 1:2582188/68‑1 ttcCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTA > 1:1364928/4‑70 tcCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAGGT > 1:2331672/3‑66 cCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAA > 1:1104893/2‑71 cCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAA > 1:335891/2‑71 cCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAA < 1:1772977/69‑1 cCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAA > 1:1392609/2‑53 cCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAA > 1:2026924/2‑53 GTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACG < 1:907425/71‑1 TGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA < 1:828470/71‑1 TGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA < 1:1330164/71‑1 TGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA < 1:123832/71‑1 TGCCGGTTGTGAAGAAAAAGTGAATGACGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACG < 1:376961/70‑1 CCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA > 1:2228762/1‑69 GTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTT‑TCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCC < 1:950550/71‑1 TTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCC > 1:3574732/1‑51 TGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCC > 1:433706/1‑70 GTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCC > 1:3848198/1‑69 GTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCC > 1:1260312/1‑69 GTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAA > 1:1469095/1‑65 GTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAAC < 1:2898553/61‑1 GTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCT < 1:2210532/50‑1 GTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGG > 1:2380060/1‑44 TGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAG < 1:2187075/71‑1 TGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCT < 1:3668791/49‑1 TGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGG < 1:932191/44‑1 GAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAG < 1:2981414/70‑1 GAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAA < 1:610439/40‑1 AAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTC < 1:2282191/71‑1 AAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGG > 1:1304850/1‑42 AAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAG > 1:2361559/1‑40 GAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTT < 1:2821261/71‑1 GAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAA > 1:1743611/1‑47 GAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCT < 1:273799/45‑1 AAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAA < 1:638958/53‑1 AAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAA < 1:2037548/53‑1 AAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAA < 1:527306/46‑1 AAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGG > 1:3184381/1‑39 AAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTC < 1:2088979/71‑1 AAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCG < 1:2105324/71‑1 AAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTC > 1:504227/1‑70 AAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAA > 1:1991759/1‑57 AAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAG > 1:1545450/1‑35 AAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGA < 1:2710902/71‑1 AAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGA < 1:2520045/71‑1 AAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA < 1:3598359/54‑1 AAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACG > 1:1606105/1‑53 AGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGT > 1:755034/1‑44 GTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAA > 1:1004482/1‑41 TGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTG < 1:3023331/71‑1 TGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTG < 1:3395130/71‑1 TGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCT < 1:3233707/63‑1 AATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAG > 1:66148/1‑71 ATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAA > 1:3201222/1‑37 TGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCC > 1:2247278/1‑71 TGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCT > 1:1943190/1‑40 ATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTT > 1:1876663/1‑71 ATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCT < 1:2934163/70‑1 TGTAGCCGTCAAGTTGTCATAAAGGGTCCTTAAGTCTAAAACGAAA > 1:969115/1‑46 TGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTT < 1:3156359/71‑1 TCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACT < 1:285419/55‑1 TCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCC < 1:1928064/42‑1 TCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACG < 1:1173244/35‑1 TCAAGTTGTCATAAAGGGTCCCTAAGTATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTT < 1:1689210/68‑1 CAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCA > 1:1721653/1‑43 CAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAA > 1:2438089/1‑36 AAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTT > 1:1503918/1‑71 AAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATT > 1:480602/1‑70 AAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTC > 1:1025060/1‑45 AAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAA > 1:3707077/1‑36 AAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAA > 1:1153852/1‑36 AGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTcg < 1:3643950/71‑3 AGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTG < 1:1445074/71‑1 AGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTC < 1:2618403/48‑1 GTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGA > 1:85452/1‑71 GTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAG < 1:3440890/41‑1 TTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGAc < 1:2658199/71‑2 GTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGAc > 1:1649343/1‑68 GTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTT < 1:326827/55‑1 TCATAAAGGGTCCCTAAGGCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTA < 1:3102419/62‑1 CATAAAGGGTCCCTAAGTCAAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTT < 1:576179/59‑1 ATAAAGTGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCC > 1:7434/1‑50 ATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTT > 1:2160900/1‑52 TAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTC < 1:3126930/40‑1 TAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTG > 1:3626776/1‑52 TAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCC > 1:1832079/1‑38 TAAGTCTAAAACGAAAGGCCCAGTCGTTCGCCTGAGCCTTTCGGTTTA > 1:3511782/1‑48 |||||||||||||| GGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/71196‑71265‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGAT > W3110S.gb/3464879‑3464926 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |