| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 71265 | 46 (1.150) | 267 (9.300) +AGGGTCCCTAAGTC |
66/72 | NT | 92.5% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 3464879 = | 14 (0.350) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
Only 100 of 530 total aligned reads displayed.
GGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGTCCA > W3110S.gb/71195‑71335 | gggCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATaa < 1:3013419/71‑1 (MQ=255) ggCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATTTAGCCGTCAAGTTGTCATAAa < 1:1722039‑M1/71‑2 (MQ=255) ggCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAa < 1:3381654‑M1/71‑2 (MQ=255) ccAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAa > 1:3521403‑M1/1‑68 (MQ=255) aGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggt < 1:2812160‑M1/71‑6 (MQ=255) gCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtc > 1:1074486‑M1/1‑65 (MQ=255) cccGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtcc > 1:2054305‑M1/1‑64 (MQ=255) ccGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtcc > 1:3454246‑M1/1‑63 (MQ=255) cgagcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccct < 1:1662558‑M1/71‑10 (MQ=255) cgagcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCAT‑Aagggtccct > 1:245685‑M1/1‑61 (MQ=255) agcgagTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGaa > 1:2540055/1‑71 (MQ=255) agcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaa < 1:3649928‑M1/71‑12 (MQ=255) cgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaag > 1:3802242‑M1/1‑58 (MQ=255) agTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtc > 1:1842146‑M1/1‑56 (MQ=255) ttccgtgCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtcta > 1:2640589‑M1/4‑54 (MQ=255) ccgTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaa > 1:1369588‑M1/2‑52 (MQ=255) ccgTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaa > 1:2932012‑M1/2‑52 (MQ=255) ccgTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagt > 1:1312856‑M1/2‑52 (MQ=255) gTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacg < 1:1169926‑M1/71‑22 (MQ=255) gTGCCGGTTGTGAAGAAAAAGTGAATAATGTAGCCGTCAAGTTGTCATAATTGGTAACCAATCAGACAAtt > 1:720729/1‑71 (MQ=255) tGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacga < 1:3339339‑M1/71‑23 (MQ=255) tGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacga < 1:828470‑M1/71‑23 (MQ=255) tGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacga < 1:3405698‑M1/71‑23 (MQ=255) tGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacga < 1:1699374‑M1/71‑23 (MQ=255) tGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacg > 1:493850‑M1/1‑49 (MQ=255) tGCCGGTTGTGAAGAAAAAGTGAATGACGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacg < 1:376961‑M1/70‑22 (MQ=255) ccGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAa < 1:2796044‑M1/48‑2 (MQ=255) gTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacga < 1:151430‑M1/66‑23 (MQ=255) gTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacga < 1:139299‑M1/66‑23 (MQ=255) gTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacga < 1:160665‑M1/66‑23 (MQ=255) gTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTaa > 1:923530/1‑51 (MQ=255) gTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTaa > 1:2255896/1‑51 (MQ=255) ttGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAag < 1:1360019‑M1/45‑3 (MQ=255) gtgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcc > 1:1291037‑M1/1‑41 (MQ=255) gtgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccct < 1:2210532‑M1/50‑10 (MQ=255) tgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccag < 1:2187075‑M1/71‑32 (MQ=255) tgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAAtt < 1:3156288/61‑1 (MQ=255) gaagaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATaa < 1:3782934/39‑1 (MQ=255) gaagaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAAtt < 1:1036577/60‑1 (MQ=255) aagaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtc < 1:2282191‑M1/71‑34 (MQ=255) aagaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtc > 1:1447078‑M1/1‑38 (MQ=255) gaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctt > 1:471006‑M1/1‑36 (MQ=255) gaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagg > 1:1488802‑M1/1‑36 (MQ=255) aaaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaa < 1:2037548‑M1/53‑19 (MQ=255) aaaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaa < 1:638958‑M1/53‑19 (MQ=255) aaaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAaggg > 1:3184381‑M1/1‑35 (MQ=255) aaaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAa < 1:2720910‑M1/36‑2 (MQ=255) aaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttc < 1:565501‑M1/71‑38 (MQ=255) aaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttc < 1:2088979‑M1/71‑38 (MQ=255) aaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaa > 1:3210689‑M1/1‑34 (MQ=255) aaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcg < 1:2885129‑M1/71‑39 (MQ=255) aaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcg < 1:2105324‑M1/71‑39 (MQ=255) aaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtct > 1:1213266‑M1/1‑33 (MQ=255) aaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacga < 1:3598359‑M1/54‑23 (MQ=255) aGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgac > 1:2416032‑M1/1‑31 (MQ=255) aGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagt > 1:755034‑M1/1‑31 (MQ=255) gTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgact < 1:1764078‑M1/71‑42 (MQ=255) gTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacg < 1:967261‑M1/51‑22 (MQ=255) gTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaa > 1:1004482‑M1/1‑30 (MQ=255) gTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCa < 1:2572371/71‑1 (MQ=255) tGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCAt < 1:905914/71‑1 (MQ=255) gAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaa > 1:2844838‑M1/1‑28 (MQ=255) aaTGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgag > 1:66148‑M1/1‑27 (MQ=255) aaTGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgag < 1:1936103‑M1/71‑45 (MQ=255) aaTGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcg < 1:1560532‑M1/65‑39 (MQ=255) aaTGATGTAGCCGTCAAGTTGTCATAAagggtccctaa > 1:3307383‑M1/1‑27 (MQ=255) atgatgTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagc > 1:2660747‑M1/1‑26 (MQ=255) atgatgTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgag < 1:2772296‑M1/70‑45 (MQ=255) tgatgTAGCCGTCAAGTTGTCATAAagggtccctaagtctaa < 1:948373‑M1/42‑18 (MQ=255) tgatgTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAggg > 1:1250056/1‑71 (MQ=255) gatgTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcc < 1:3565452‑M1/52‑29 (MQ=255) atgTATCCGTCAAGTTGTCATAAagggtccctaagt > 1:609539‑M1/1‑23 (MQ=255) atgTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcct < 1:1808244‑M1/70‑48 (MQ=255) tAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcg < 1:1976797‑M1/71‑52 (MQ=255) tAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttc < 1:2342309‑M1/70‑51 (MQ=255) tAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcga > 1:2016490‑M1/1‑20 (MQ=255) tAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacga < 1:424316‑M1/42‑23 (MQ=255) tAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTg > 1:3063994/1‑70 (MQ=255) gCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTg > 1:3270354/1‑68 (MQ=255) ccGTCAAGTTGTCATAAagggtccctaagtctaaaacg < 1:2983228‑M1/38‑22 (MQ=255) tCAAGTTGTCATAAagggtccctaagtctaaagcgaaaggcccagtctttcgactgagcctt < 1:3700939‑M1/62‑49 (MQ=255) tCAAGTTGTCATAAagggtccctaagtctaaaacga < 1:2957480‑M1/36‑23 (MQ=255) tCAAGTTGTCATAAagggtccctaagtctaaaacga < 1:2367006‑M1/36‑23 (MQ=255) aaGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttattt > 1:2233824‑M1/1‑12 (MQ=255) aaGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttatt > 1:1650349‑M1/1‑12 (MQ=255) aaGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttc > 1:3234255‑M1/1‑12 (MQ=255) aaGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtc > 1:1152402‑M1/1‑12 (MQ=255) aGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttc < 1:2618403‑M1/48‑38 (MQ=255) gTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttatttga > 1:85452‑M1/1‑10 (MQ=255) ttGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGa > 1:3842916/1‑40 (MQ=255) tGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcga > 1:3623807‑M1/1‑8 (MQ=255) tGTCATAAaggggccctaagtctaaaacgaaaggcccagtctttc < 1:2491397‑M1/45‑38 (MQ=255) tCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttatttgaccg < 1:1913464‑M1/70‑65 (MQ=255) tCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttatttgac < 1:1775705‑M1/68‑63 (MQ=255) tCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttatttg < 1:1095656‑M1/66‑61 (MQ=255) tCATAAagggtccctaaggctaaaacgaaaggcccagtctttcgactgagcctttcgtttta < 1:3102419‑M1/62‑57 (MQ=255) aTAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctt > 1:2160900‑M1/1‑4 (MQ=255) tAAagggtccctaagtctaaaacgaaaggcccagtctttc < 1:3126930‑M1/40‑38 (MQ=255) aagggtccctaagtctaaaacgaaaggcccagtctttcgac > 1:522551‑M1/1‑1 (MQ=255) aTTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGTcc < 1:3661602/70‑1 (MQ=255) | GGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGTCCA > W3110S.gb/71195‑71335 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |