New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb 2549829 =23 (0.580)15 (0.450)
+CAACTAAA		 3/84 NT 35.1% coding (241/792 nt) ucpA predicted oxidoredutase, sulfate metabolism protein
?W3110S.gb = 3452629 43 (1.080)coding (2808/4029 nt) rpoB RNA polymerase, beta subunit

ACGCGCGAAGGAAAAAGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/2549848‑2549829
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGATGGCGTAGAAAAAGACAAACG  <  W3110S.gb/3452629‑3452606
                    ||||||||                        
aaGCGGGAAGGAAAAAGAAGCAACTAAACGAGGGTGTAGAAAAAGACGAA    >  1:3129305/3‑50
aaGCGGGAAGGAAAAAGAAGCAACTAAACGAGGGTGTAGAAAAAGAC       >  1:2122780/3‑47
aaGCGGGAAGGAAAAAGAAGCAACTAAACGAGGGTGTAGAAAAAGAC       >  1:2640136/3‑47
 aGCGGGAAGGAAAAAGAAGCAACTAAACGAGGGCGTAGAAAAAGACg      <  1:2880706/46‑2
    ggGAAGGAAAAAGAAGCAACTAAACGAGGGTGTAGAAAAA          >  1:1389286/3‑40
     gGAAGGAAAAAGAAGCAACTAAACGAGGGCGTAGAAAAAGACg      <  1:2965092/42‑2
       AAGGAAAAAGAAGCAACTAAACGAGGGCGTAGAAAAA          >  1:1261739/1‑37
        AGGAAAAAGAAGCAACTAAACGAGGGTGTAGAAAAA          >  1:2048913/1‑36
        AGGAAAAAGAAGCAACTAAACGAGGGTGTAGAAAAA          >  1:609077/1‑36
         GGAAAAAGAAGCAACTAAACGAGGGTGTAGAAAAAGACg      <  1:1306607/39‑2
            AAAAGAAGCAACTAAACGAGGGTGTAGAAAAAGACg      <  1:2108625/36‑2
            AAAAGAAGCAACTAAACGAGGGTGTAGAAAAAGACg      <  1:69803/36‑2
            AAAAGAAGCAACTAAACGAGGGTGTAGAAAAAGACGAAga  <  1:2205785/40‑3
            AAAAGAAGCAACTAAACGAGGGTGTAGAAAAAGACGAAga  <  1:2962878/40‑3
             AAAGAAGCAACTAAACGAGGGCGTAGAAAAAGACGAA    >  1:1918110/1‑37
                    ||||||||                        
ACGCGCGAAGGAAAAAGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/2549848‑2549829
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGATGGCGTAGAAAAAGACAAACG  <  W3110S.gb/3452629‑3452606

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.