| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2549829 = | 23 (0.580) | 15 (0.450) +CAACTAAA |
3/84 | NT | 35.1% | coding (241/792 nt) | ucpA | predicted oxidoredutase, sulfate metabolism protein |
| ? | W3110S.gb | = 3452629 | 43 (1.080) | coding (2808/4029 nt) | rpoB | RNA polymerase, beta subunit | |||||
GCTCATATCGAGGAAACTGCCCAGACGACAAACGCCTGCGTTATTCACCAGGATATCAATGCGCCCTTCTTTTTCCTTCGCGCGTTTGATAGCTGCGGCTACCGACGCCGGGTCACGCACATCGGCGACAAC > W3110S.gb/2549764‑2549895 | gCTCATATCGAGGAAACTGCCCAGACGACAAACGCCTGCGTTATTCACCAGGATATCAATGCGCCcttctt > 1:857996/1‑71 (MQ=255) atCGAGGAAACTGCCCAGACGACAAACGCCTGCGTTATTCACCAGGATATCAATGCGCCCTTCttttt > 1:3287326/1‑68 (MQ=255) atCGAGGAAACTGCCCAGACGACAAACGCCTGCGTTATTCACCAGGATATCAATGCGCCCTTCTTTTTCCt > 1:2139662/1‑71 (MQ=255) tCGAGGAAACTGCCCAGACGACAAACGCCTGCGTTATTCACCAGGATATCAATGCGCCCTTCtttt > 1:74445/1‑66 (MQ=255) gAGGAAACTGCCCAGACGACAAACGCCTGCGTTATTCACCAGGATATCAATGCGCCCTTCTTTTTCCTTcg > 1:3265042/1‑71 (MQ=255) cTGCCCAGACGACAAACGCCTGCGTTATTCACCAGGATATCAATGCGCCCTTCTTTTTCCTTCGCGCGttt < 1:1318384/71‑1 (MQ=255) tGCCCAGACGACAAACGCCTGCGTTATTCACCAGGATATCAATGCGCCCTTCTTTTTCCTTcg < 1:208663/63‑1 (MQ=255) cccAGACGACAAACGCCTGCGTTATTCACCAGGATATCAATGCGCCCTTCTTTTTCCTTCGCGCGTTTg < 1:612179/69‑1 (MQ=255) cccAGACGACAAACGCCTGCGTTATTCACCAGGATATCAATGCGCCCTTCTTTTTCCTTCGCGCGTTTGa > 1:666857/1‑70 (MQ=255) cccAGACGACAAACGCCTGCGTTATTCACCAGGATATCAATGCGCCCTTCTTTTTCCTTCGCGCGTTTGAt < 1:1106152/71‑1 (MQ=255) cccAGACGACAAACGCCTGCGTTATTCACCAGGATATCAATGCGCCCTTCTTTTTCCTTCGCGCGTTTGAt < 1:3237395/71‑1 (MQ=255) cccAGACGACAAACGCCTGCGTTATTCACCAGGATATCAATGCGCCCTTCTTTTTCCTTCGCGCGTTTGAt < 1:2717473/71‑1 (MQ=255) aaaCGCCTGCGTTATTCACCAGGATATCAATGCGCCCTTCTTTTTCCTTCGCGCGTTTGATAGCTGCGGc > 1:872868/1‑70 (MQ=255) aaaCGCCTGCGTTATTCACCAGGATATCAATGCGCCCTTCTTTTTCCTTCGCGCGTTTGATAGCTGCGGCt < 1:2263173/71‑1 (MQ=255) cGCCTGCGTTATTCACCAGGATATCAATGCGCCCTTCTTTTTCCTTAGCGCGTTTGATAGCTGCGGCTAcc < 1:3145233/71‑1 (MQ=255) tcttcgtctttttctacaccctcgtttagttgCTTCtttt < 1:2205785‑M1/8‑1 (MQ=255) tcttcgtctttttctacaccctcgtttagttgCTTCtttt < 1:2962878‑M1/8‑1 (MQ=255) ttcgtctttttctacgccctcgtttagttgCTTCttt > 1:1918110‑M1/31‑37 (MQ=255) ttcgtctttttctacaccctcgtttagttgCTTCTTTTTCCttcccgctt > 1:3129305‑M1/31‑48 (MQ=255) cgtctttttctacgccctcgtttagttgCTTCTTTTTCCTtcccgct < 1:2880706‑M1/19‑2 (MQ=255) cgtctttttctacgccctcgtttagttgCTTCTTTTTCCTtcc < 1:2965092‑M1/15‑2 (MQ=255) cgtctttttctacaccctcgtttagttgCTTCtttt < 1:2108625‑M1/8‑1 (MQ=255) cgtctttttctacaccctcgtttagttgCTTCtttt < 1:69803‑M1/8‑1 (MQ=255) cgtctttttctacaccctcgtttagttgCTTCTTTTTcc < 1:1306607‑M1/11‑1 (MQ=255) gtctttttctacaccctcgtttagttgCTTCTTTTTCCttcccgctt > 1:2640136‑M1/28‑45 (MQ=255) gtctttttctacaccctcgtttagttgCTTCTTTTTCCttcccgctt > 1:2122780‑M1/28‑45 (MQ=255) tttttctacgccctcgtttagttgCTTCTTTTTCCtt > 1:1261739‑M1/25‑37 (MQ=255) tttttctacaccctcgtttagttgCTTCTTTTTCCttccc > 1:1389286‑M1/25‑38 (MQ=255) tttttctacaccctcgtttagttgCTTCTTTTTCCt > 1:2048913‑M1/25‑36 (MQ=255) tttttctacaccctcgtttagttgCTTCTTTTTCCt > 1:609077‑M1/25‑36 (MQ=255) tATTCACCAGGATATCAATGCGCCCTTCTTTTTCCTTCGCGCGTTTGATAGCTGCGGCTACCGACGCCggg > 1:2332001/1‑71 (MQ=255) tATTCACCAGGATATCAATGCGCCCTTCTTTTTCCTTCGCGCGTTTGATAGCTGCGGCTACCGACGCCggg > 1:2938497/1‑71 (MQ=255) tCACCAGGATATCAATGCGCCCTTCTTTTTCCTTCGCGCGTTTGATAGCTGCGGCTACCGACGCCggg < 1:1445268/68‑1 (MQ=255) ggATATCAATGCGCCCTTCTTTTTCCTTCGCGCGttt < 1:397322/37‑1 (MQ=255) tatCAATGCGCCCTTCTTTTTCCTTCGCGCGTTTGATAGCTGCGGCTACCGACGCCGGGTCACGCACATCg > 1:2260229/1‑71 (MQ=255) tCAATGCGCCCTTCTTTTTCCTTCGCGCGTTTGATAGCTGCGGCTACCGACGCCGGGTCACGCACATCGGc < 1:3834362/71‑1 (MQ=255) aTGCGCCCTTCTTTTTCCTTCGCGCGTTTGATAGCTGCGGCTACCGACGCCGGGTCACGCACATCGGCGAc < 1:1972950/71‑1 (MQ=255) aTGCGCCCTTCTTTTTCCTTCGCGCGTTTGATAGCTGCGGCTACCGACGCCGGGTCACGCACATCGGCGAc < 1:1090726/71‑1 (MQ=255) cgcCCTTCTTTTTCCTTCGCGCGTTTGATAGCTGCGGCTACCGACGCCGGGTCAAGCACATCGGCGACAAc > 1:2490141/1‑71 (MQ=255) | GCTCATATCGAGGAAACTGCCCAGACGACAAACGCCTGCGTTATTCACCAGGATATCAATGCGCCCTTCTTTTTCCTTCGCGCGTTTGATAGCTGCGGCTACCGACGCCGGGTCACGCACATCGGCGACAAC > W3110S.gb/2549764‑2549895 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |