| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2172308 = | NA (NA) | 54 (1.380) | 36/98 | NT | 100% | pseudogene (1563/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | = 3920281 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
TTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCA > W3110S.gb/2172242‑2172371 | tttttGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGAt < 1:1850523/70‑1 (MQ=255) tttGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCt < 1:1660428/70‑1 (MQ=255) tGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTa < 1:537962/70‑1 (MQ=255) gCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTAcc < 1:3746822/70‑1 (MQ=255) tCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAg > 1:621995/1‑69 (MQ=255) tCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGc > 1:2995544/1‑70 (MQ=255) tCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGc > 1:3638691/1‑70 (MQ=255) cATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa > 1:2950591/1‑71 (MQ=255) cATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa > 1:3351548/1‑71 (MQ=255) aTTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAAt < 1:3792016/71‑1 (MQ=255) ttAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCt < 1:3798622/59‑1 (MQ=255) ttAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATa < 1:3508945/71‑1 (MQ=255) ttAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATa < 1:874728/71‑1 (MQ=255) tAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa > 1:729891/1‑68 (MQ=255) tAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAg > 1:3598117/1‑71 (MQ=255) aaTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa > 1:1763550/1‑67 (MQ=255) aaTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa > 1:2600159/1‑67 (MQ=255) aaTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa > 1:2308531/1‑67 (MQ=255) aaTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGt > 1:988749/1‑71 (MQ=255) aaTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACACAGCaa > 1:3676213/1‑67 (MQ=255) aTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa < 1:2786866/66‑1 (MQ=255) aTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa < 1:2105513/66‑1 (MQ=255) aTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa < 1:736707/66‑1 (MQ=255) tCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGAt < 1:3135291/53‑1 (MQ=255) tCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGAt < 1:546650/53‑1 (MQ=255) cTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTAc > 1:1229774/1‑56 (MQ=255) cTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTAc > 1:3817408/1‑56 (MQ=255) cTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATa > 1:3764163/1‑65 (MQ=255) cTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGa < 1:346057/70‑1 (MQ=255) ttCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTg < 1:353951/48‑1 (MQ=255) cGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGAt > 1:154860/1‑48 (MQ=255) aGCATTGTCTTACTTCCGCTGTCGAGAATAACGGTCTGa < 1:2790246/39‑1 (MQ=255) gCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTg < 1:1180481/37‑1 (MQ=255) gCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTg < 1:2836115/37‑1 (MQ=255) gCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTg < 1:1754685/37‑1 (MQ=255) gCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt < 1:309034/71‑1 (MQ=255) cATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATc > 1:2997536/1‑39 (MQ=255) cATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATc > 1:2032598/1‑39 (MQ=255) cATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATc > 1:3128443/1‑39 (MQ=255) cATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATc > 1:1618751/1‑39 (MQ=255) ttGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCtt < 1:1806509/39‑1 (MQ=255) tGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCt < 1:1355374/37‑1 (MQ=255) gTCGTACTTCCGCTGTCGAGGATAACGGTCTGATCTTACCCAGCAATa > 1:3517023/1‑48 (MQ=255) gTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTAcca > 1:1612131/1‑40 (MQ=255) gTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATa > 1:1734442/1‑48 (MQ=255) gTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATa > 1:3190646/1‑48 (MQ=255) gTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACAcgc > 1:70085/1‑58 (MQ=255) gTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACAcgc > 1:1418952/1‑58 (MQ=255) gTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGt > 1:616441/1‑70 (MQ=255) gTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGt > 1:2686560/1‑70 (MQ=255) tCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa < 1:49302/70‑1 (MQ=255) tCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa > 1:2177400/1‑70 (MQ=255) tCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa > 1:3397272/1‑70 (MQ=255) cTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActc < 1:3049167/70‑1 (MQ=255) cTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActc < 1:1302373/70‑1 (MQ=255) ttCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa < 1:862443/64‑1 (MQ=255) ccGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAg > 1:3276014/1‑40 (MQ=255) ccGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAg > 1:875855/1‑40 (MQ=255) ccGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGa > 1:2826626/1‑44 (MQ=255) ccGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGa > 1:3290463/1‑44 (MQ=255) ccGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcag > 1:2717503/1‑71 (MQ=255) ccGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtca > 1:3304032/1‑70 (MQ=255) tCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag < 1:2258818/69‑1 (MQ=255) tCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga < 1:3364671/70‑1 (MQ=255) gagaATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAc > 1:1443189/1‑57 (MQ=255) tAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCt < 1:156208/40‑1 (MQ=255) tAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag < 1:1939828/62‑1 (MQ=40) aaCGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCt < 1:2854244/39‑1 (MQ=255) aaCGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag < 1:3359483/61‑1 (MQ=39) aCGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa > 1:526892/1‑49 (MQ=40) aCGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa > 1:3026972/1‑49 (MQ=40) aCGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa > 1:3756526/1‑49 (MQ=40) aCGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca > 1:2351711/1‑70 (MQ=37) aCGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca > 1:445068/1‑70 (MQ=37) gTCTGATCTTACCCAGCAATAGTGGACACGCGGCt < 1:1062679/35‑1 (MQ=33) gTCTGATCTTACCCAGCAATAGTGGACACGCGGCTa < 1:3017895/36‑1 (MQ=33) | TTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCA > W3110S.gb/2172242‑2172371 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |