| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2172308 = | NA (NA) | 54 (1.380) | 36/98 | NT | 100% | pseudogene (1563/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | = 3920281 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
Only 100 of 194 total aligned reads displayed.
AGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATAC > W3110S.gb/3920212‑3920349 | ggACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtg > 1:2693508‑M2/1‑69 (MQ=255) ggACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtg > 1:905373‑M2/1‑69 (MQ=255) ggACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtg > 1:310486‑M2/1‑69 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacac < 1:3462775‑M2/4‑1 (MQ=255) gACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtga < 1:2625400‑M2/71‑4 (MQ=255) tccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCt > 1:1602871‑M2/64‑71 (MQ=255) acacTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtga < 1:1470268‑M2/70‑4 (MQ=255) cacTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatc < 1:3232918‑M2/71‑6 (MQ=255) cacTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatc < 1:422323‑M2/71‑6 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACActtcggt < 1:2676157‑M2/10‑4 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACttcgg < 1:2896474‑M2/9‑3 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACttcgg < 1:1785965‑M2/9‑3 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt < 1:3277910‑M2/9‑1 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt < 1:3840851‑M2/9‑1 (MQ=255) gaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt < 1:1955729‑M2/9‑1 (MQ=255) gaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt > 1:2806151‑M2/60‑68 (MQ=255) gaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTag < 1:380733‑M2/12‑1 (MQ=255) ttCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttac < 1:1492957‑M2/71‑10 (MQ=255) acaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTagag < 1:1020622‑M2/14‑1 (MQ=255) acaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTagag > 1:739198‑M2/58‑71 (MQ=255) aatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGc > 1:2133349‑M2/56‑70 (MQ=255) aCCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttaccca > 1:3160738‑M2/1‑57 (MQ=255) tgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCg > 1:2740096‑M2/52‑71 (MQ=255) gTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgat < 1:2098163‑M2/55‑5 (MQ=255) gTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgat < 1:244332‑M2/55‑5 (MQ=255) aacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:1702892‑M2/24‑1 (MQ=255) caagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg > 1:2496297‑M2/46‑69 (MQ=255) cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtgga > 1:1999598‑M2/1‑48 (MQ=255) agaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGt < 1:834196‑M2/28‑1 (MQ=255) gaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGt > 1:3760108‑M2/43‑70 (MQ=255) ctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgatga < 1:3296238‑M2/33‑1 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTc < 1:1872247‑M2/22‑1 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtagcatcACACATCTTTAGAGCCATCGTc < 1:2051622‑M2/22‑1 (MQ=255) tGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcgg > 1:2992190‑M2/1‑40 (MQ=255) cgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGa > 1:3182111‑M2/37‑62 (MQ=255) gcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaa < 1:2171208‑M2/34‑1 (MQ=255) gTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggc < 1:2872278‑M2/70‑32 (MQ=255) gTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtga < 1:586674‑M2/42‑4 (MQ=255) ttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagcc > 1:2080298‑M2/34‑70 (MQ=255) aaCCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcgg < 1:65355‑M2/67‑31 (MQ=255) aggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccg < 1:1273041‑M2/38‑1 (MQ=255) aTCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtgg > 1:1002000‑M2/1‑33 (MQ=255) tCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc > 1:2774469‑M2/1‑32 (MQ=255) tCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatctta > 1:2607306‑M2/1‑32 (MQ=255) ctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCt < 1:2377863‑M2/44‑1 (MQ=255) cGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgag < 1:314631‑M2/70‑40 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttac < 1:3650986‑M2/39‑10 (MQ=255) ttCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaa > 1:2530313‑M2/1‑29 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAg > 1:3394528‑M2/25‑51 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCttt < 1:830574‑M2/46‑1 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCttt < 1:939867‑M2/46‑1 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTg > 1:2145480‑M2/25‑71 (MQ=255) tCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat < 1:932104‑M2/45‑18 (MQ=255) gATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactct > 1:1449944‑M2/1‑24 (MQ=255) gATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactct > 1:3489408‑M2/1‑24 (MQ=255) catattacgtgggtaggatcACACATCTTTAGAGCCa > 1:1771652‑M2/21‑37 (MQ=255) catattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAg > 1:3437715‑M2/21‑71 (MQ=255) catattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAg > 1:1709834‑M2/21‑71 (MQ=255) atattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGc < 1:1328311‑M2/52‑1 (MQ=255) tattacgtgggtaggatcACACATCTTTAGAGCCATc < 1:2190156‑M2/19‑1 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATc < 1:36664‑M2/19‑1 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGt < 1:845618‑M2/54‑1 (MQ=255) gCAGAGAAGTGTACGAACACtgatcttacccagcaat > 1:3578775‑M2/1‑20 (MQ=255) tacgtgggtaggatcACACATCTTTATAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGtt > 1:2386876‑M2/16‑70 (MQ=255) acgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccgaag > 1:1809624‑M2/15‑55 (MQ=255) acgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTg > 1:701907‑M2/15‑70 (MQ=255) gtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAAc < 1:3354903‑M2/59‑1 (MQ=255) agaAGTGTACGAACACtgatcttacccagcaatagtggacacg > 1:3831747‑M2/1‑16 (MQ=255) agaAGTGTACGAACACtgatcttacccagcaatagtggacacg > 1:3674611‑M2/1‑16 (MQ=255) agaAGTGTACGAACACtgatcttacccagcaatagtggacacg > 1:1554844‑M2/1‑16 (MQ=255) agaAGTGTACGAACACtgatcttacccagcaatagtggacac > 1:1849232‑M2/1‑16 (MQ=255) ggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCa < 1:1964381‑M2/61‑1 (MQ=255) ggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAt < 1:3822024‑M2/62‑1 (MQ=255) ggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAt < 1:3065106‑M2/62‑1 (MQ=255) ggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAt < 1:3602131‑M2/62‑1 (MQ=255) aGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggt > 1:3224758‑M2/1‑13 (MQ=255) gtACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtga < 1:52512‑M2/70‑61 (MQ=255) gtACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtca > 1:1046363‑M2/1‑10 (MQ=255) gtACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtca > 1:204328‑M2/1‑10 (MQ=255) aggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTg > 1:3015749‑M2/7‑62 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgact < 1:15309‑M2/71‑63 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagt > 1:758198‑M2/1‑9 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggc > 1:1040195‑M2/1‑7 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggc > 1:3451049‑M2/1‑7 (MQ=255) atcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAt < 1:2702559‑M2/62‑1 (MQ=255) tcactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtca > 1:3469479‑M2/2‑4 (MQ=255) acactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacat < 1:1852923‑M2/71‑68 (MQ=255) acactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacat < 1:1212648‑M2/71‑68 (MQ=255) acactgatcttacccagcaatagtggacacgcggctaagtgag < 1:1138264‑M2/43‑40 (MQ=255) acactgatcttacccagcaatagtggacacgcggct < 1:3527401‑M2/36‑33 (MQ=255) ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATa < 1:1922351‑M2/71‑1 (MQ=255) cactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgac < 1:239735‑M2/64‑62 (MQ=255) cactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagagg < 1:48683‑M2/60‑58 (MQ=255) cactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagagg < 1:3030694‑M2/60‑58 (MQ=255) cactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctca > 1:2932419‑M2/1‑3 (MQ=255) cactgatcttacccagcaatagtggacacgcggctaagtgag < 1:3018363‑M2/42‑40 (MQ=255) ctgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactc < 1:3711884‑M2/64‑64 (MQ=255) ctgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagagg < 1:392773‑M2/58‑58 (MQ=255) ctgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtca > 1:2883572‑M2/1‑1 (MQ=255) caTCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATAc > 1:177134/1‑69 (MQ=255) | AGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATAC > W3110S.gb/3920212‑3920349 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |