New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb 70064 =28 (0.750)25 (0.970)
+TGGACGCGTACAACT
9/70 NT 39.6% intergenic (‑16/‑323) araB/araC L‑ribulokinase/DNA‑binding transcriptional dual regulator
?W3110S.gb 236044 = 82 (2.210)intergenic (‑42/‑23) rnhA/dnaQ ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit

AGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/70130‑70064
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGA  >  W3110S.gb/236044‑236107
                                                                   |||||||||||||||                                                                
AGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTG                                                                               >  1:2725816/1‑69
AGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTG                                                                               >  1:212801/1‑69
  ATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGA                                                                             >  1:1047253/1‑69
           TCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAA                                                                    >  1:2912993/1‑68
           TCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAA                                                                    >  1:2310787/1‑68
               ACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTG                                                                               >  1:1331432/1‑54
                    ACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCT                                                           >  1:3719185/1‑68
                    ACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCT                                                           >  1:2516138/1‑68
                      GCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTG                                                          <  1:1194848/68‑1
                             ATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAAT                                                  <  1:969486/68‑1
                                    CTCGCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC                                            <  1:2308238/68‑1
                                     TCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCT                                           >  1:1061421/1‑67
                                                TCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC                                <  1:276114/68‑1
                                                TCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC                                <  1:2592042/68‑1
                                                   CCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT                             <  1:2435827/68‑1
                                                      TACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACA                         >  1:1997548/1‑69
                                                      TACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACA                         >  1:166862/1‑69
                                                      TACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACA                         >  1:213665/1‑69
                                                      TACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC                                <  1:2607086/61‑1
                                                        CCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACAC                        >  1:2835220/1‑68
                                                        CCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACAC                        >  1:2990015/1‑68
                                                        CCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACAC                        >  1:1541335/1‑68
                                                        CCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACAC                        >  1:3602438/1‑68
                                                        CCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC                                            >  1:2339114/1‑48
                                                        CCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC                                            >  1:1450702/1‑48
                                                        CCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC                                            >  1:2652675/1‑48
                                                        CCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC                                            >  1:3210837/1‑48
                                                        CCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC                                            >  1:3673162/1‑48
                                                        CCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC                                            >  1:714832/1‑48
                                                        CCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC                                            >  1:55051/1‑48
                                                           cgTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTA                           <  1:535557/60‑1
                                                              TTTTTTGGACGCGTACTACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC                                >  1:2672444/1‑54
                                                                  TTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT              <  1:536007/68‑1
                                                                  TTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT              <  1:1230659/68‑1
                                                                  TTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT              <  1:1451549/68‑1
                                                                   TGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTT             <  1:1443309/68‑1
                                                                   TGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG                                      >  1:2607321/1‑43
                                                                      ACGCGTACAACTCAAGTCTGACATAAATGTCCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTC          <  1:3714210/68‑1
                                                                      ACGCGTACAACTCAAGTCTGACATAAATGTCCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTC          <  1:470596/68‑1
                                                                      ACGCGTACAACTCAAGTCTGACATAAATGTCCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTC          <  1:3599374/68‑1
                                                                      ACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTC          <  1:2387345/68‑1
                                                                      ACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT              <  1:193910/64‑1
                                                                       CGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGc        <  1:2874579/69‑2
                                                                          GTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTAC     <  1:2591558/69‑1
                                                                          GTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTAC     <  1:2716209/69‑1
                                                                             CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGc  <  1:3344441/69‑2
                                                                             CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGc  >  1:2545064/1‑68
                                                                             CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGc  >  1:2590318/1‑68
                                                                             CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGc  >  1:2704774/1‑68
                                                                             CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCC                     >  1:90242/1‑50
                                                                             CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACCCCAGATCGTTCTCGCTACCGc  >  1:2421522/1‑68
                                                                             CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC                                <  1:27758/39‑1
                                                                             CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC                                <  1:452185/39‑1
                                                                             CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC                                <  1:648661/39‑1
                                                                             CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC                                <  1:3174511/39‑1
                                                                             CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC                                <  1:870186/39‑1
                                                                             CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC                                <  1:1939144/39‑1
                                                                             CAACTCAAGTCTGACATAAATGAACGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGc  >  1:3589298/1‑68
                                                                   |||||||||||||||                                                                
AGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/70130‑70064
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGA  >  W3110S.gb/236044‑236107

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.