| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 70064 = | 28 (0.750) | 25 (0.970) +TGGACGCGTACAACT |
9/70 | NT | 39.6% | intergenic (‑16/‑323) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 236044 = | 82 (2.210) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
AGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/70130‑70064‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGA > W3110S.gb/236044‑236107 ||||||||||||||| AGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTG > 1:2725816/1‑69AGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTG > 1:212801/1‑69 ATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGA > 1:1047253/1‑69 TCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAA > 1:2912993/1‑68 TCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAA > 1:2310787/1‑68 ACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTG > 1:1331432/1‑54 ACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCT > 1:3719185/1‑68 ACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCT > 1:2516138/1‑68 GCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTG < 1:1194848/68‑1 ATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAAT < 1:969486/68‑1 CTCGCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC < 1:2308238/68‑1 TCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCT > 1:1061421/1‑67 TCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC < 1:276114/68‑1 TCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC < 1:2592042/68‑1 CCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT < 1:2435827/68‑1 TACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACA > 1:1997548/1‑69 TACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACA > 1:166862/1‑69 TACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACA > 1:213665/1‑69 TACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC < 1:2607086/61‑1 CCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACAC > 1:2835220/1‑68 CCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACAC > 1:2990015/1‑68 CCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACAC > 1:1541335/1‑68 CCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACAC > 1:3602438/1‑68 CCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC > 1:2339114/1‑48 CCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC > 1:1450702/1‑48 CCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC > 1:2652675/1‑48 CCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC > 1:3210837/1‑48 CCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC > 1:3673162/1‑48 CCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC > 1:714832/1‑48 CCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC > 1:55051/1‑48 cgTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTA < 1:535557/60‑1 TTTTTTGGACGCGTACTACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC > 1:2672444/1‑54 TTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT < 1:536007/68‑1 TTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT < 1:1230659/68‑1 TTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT < 1:1451549/68‑1 TGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTT < 1:1443309/68‑1 TGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG > 1:2607321/1‑43 ACGCGTACAACTCAAGTCTGACATAAATGTCCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTC < 1:3714210/68‑1 ACGCGTACAACTCAAGTCTGACATAAATGTCCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTC < 1:470596/68‑1 ACGCGTACAACTCAAGTCTGACATAAATGTCCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTC < 1:3599374/68‑1 ACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTC < 1:2387345/68‑1 ACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT < 1:193910/64‑1 CGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGc < 1:2874579/69‑2 GTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTAC < 1:2591558/69‑1 GTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTAC < 1:2716209/69‑1 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGc < 1:3344441/69‑2 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGc > 1:2545064/1‑68 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGc > 1:2590318/1‑68 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGc > 1:2704774/1‑68 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCC > 1:90242/1‑50 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACCCCAGATCGTTCTCGCTACCGc > 1:2421522/1‑68 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC < 1:27758/39‑1 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC < 1:452185/39‑1 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC < 1:648661/39‑1 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC < 1:3174511/39‑1 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC < 1:870186/39‑1 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC < 1:1939144/39‑1 CAACTCAAGTCTGACATAAATGAACGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGc > 1:3589298/1‑68 ||||||||||||||| AGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/70130‑70064‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGA > W3110S.gb/236044‑236107 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |