| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 70064 = | 28 (0.750) | 25 (0.970) +TGGACGCGTACAACT |
9/70 | NT | 39.6% | intergenic (‑16/‑323) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 236044 = | 82 (2.210) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
CCAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTA > W3110S.gb/69997‑70132 | acgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgtccaa < 1:536007‑M1/1‑1 (MQ=255)acgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgtccaa < 1:1230659‑M1/1‑1 (MQ=255)acgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgtccaa < 1:1451549‑M1/1‑1 (MQ=255) aGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCaaaaaa > 1:514884/1‑69 (MQ=255) gtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgtccaAAAAAAACggg > 1:2835220‑M1/58‑68 (MQ=255) gtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgtccaAAAAAAACggg > 1:2990015‑M1/58‑68 (MQ=255) gtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgtccaAAAAAAACggg > 1:3602438‑M1/58‑68 (MQ=255) gtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgtccaAAAAAAACggg > 1:1541335‑M1/58‑68 (MQ=255) tgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgtccaAAAAAAACGGGTa > 1:166862‑M1/57‑69 (MQ=255) tgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgtccaAAAAAAACGGGTa > 1:213665‑M1/57‑69 (MQ=255) tgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgtccaAAAAAAACGGGTa > 1:1997548‑M1/57‑69 (MQ=255) acaGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACggg < 1:1700154/67‑1 (MQ=255) caGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCaaaaa > 1:2824917/1‑60 (MQ=255) taattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgtccaaaaaaacg < 1:535557‑M1/8‑3 (MQ=255) aGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATg < 1:499999/69‑1 (MQ=255) aGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATg < 1:3480169/69‑1 (MQ=255) attgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgtccaAAAAAAACGGGTATgg < 1:2435827‑M1/16‑1 (MQ=255) tCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCaaaaa < 1:2416349/55‑1 (MQ=255) tCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCaaaaa < 1:3366767/55‑1 (MQ=255) gcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgtccaAAAAAAACGGGTATGgaga < 1:276114‑M1/19‑1 (MQ=255) gcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgtccaAAAAAAACGGGTATGgaga < 1:2592042‑M1/19‑1 (MQ=255) gcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgtccaAAAAAA‑CGGGTa < 1:2607086‑M1/12‑1 (MQ=255) gcagtgctcatagcggtcatttatgtcagacttgagtagtacgcgtccaaaaaa > 1:2672444‑M1/50‑54 (MQ=255) aCTGCCAAAATCGAGGCCAATTGCTATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGgaga > 1:1420893/1‑67 (MQ=255) aaaTCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTa > 1:19554/1‑67 (MQ=255) agcggtcatttatgtcagacttgagttgtacgcgtccaAAAAAA‑CGGGTATGGAGAAACAGTagaga > 1:1061421‑M1/39‑67 (MQ=255) gcggtcatttatgtcagacttgagttgtacgcgtccaAAAAAAACggg > 1:1450702‑M1/38‑48 (MQ=255) gcggtcatttatgtcagacttgagttgtacgcgtccaAAAAAAACggg > 1:3673162‑M1/38‑48 (MQ=255) gcggtcatttatgtcagacttgagttgtacgcgtccaAAAAAAACggg > 1:2339114‑M1/38‑48 (MQ=255) gcggtcatttatgtcagacttgagttgtacgcgtccaAAAAAAACggg > 1:2652675‑M1/38‑48 (MQ=255) gcggtcatttatgtcagacttgagttgtacgcgtccaAAAAAAACggg > 1:3210837‑M1/38‑48 (MQ=255) gcggtcatttatgtcagacttgagttgtacgcgtccaAAAAAAACggg > 1:714832‑M1/38‑48 (MQ=255) gcggtcatttatgtcagacttgagttgtacgcgtccaAAAAAAACggg > 1:55051‑M1/38‑48 (MQ=255) gcggtcatttatgtcagacttgagttgtacgcgtccaAAAAAAACGGGTATGGAGAAACAGTagcgag < 1:2308238‑M1/31‑1 (MQ=255) ccAATTGCAATCGCCATCGTTTCACTCCATCCaaaaa < 1:3014633/37‑1 (MQ=255) atttatgtcagacttgagttgtacgcgtccaAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGAt < 1:969486‑M1/37‑1 (MQ=255) ttGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATaaa < 1:2859641/69‑1 (MQ=255) tGCAATCGCCATCGTTTCACTCCTTCCAAAAAAACGGGTATGGAGAAACAGTagaga < 1:2993511/57‑1 (MQ=255) tGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGgaga > 1:984780/1‑46 (MQ=255) tGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGgaga > 1:1974029/1‑46 (MQ=255) cagacttgagttgtacgcgtccaAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGc < 1:1194848‑M1/45‑1 (MQ=255) agacttgagttgtacgcgtccaAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGt > 1:3719185‑M1/23‑68 (MQ=255) agacttgagttgtacgcgtccaAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGt > 1:2516138‑M1/23‑68 (MQ=255) cGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTc > 1:412695/1‑69 (MQ=255) cGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTc > 1:3178898/1‑69 (MQ=255) cGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTc > 1:3429606/1‑69 (MQ=255) cGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTc < 1:2524373/69‑1 (MQ=255) gCCATCGTTTCACTCCATCCAAAAAAACGGGTATGgaga < 1:2273600/39‑1 (MQ=255) gCCATCGTTTCACTCCATCCAAAAAAACGGGTATGgaga < 1:2427521/39‑1 (MQ=255) cGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGt < 1:2892603/62‑1 (MQ=255) cGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGt < 1:2709451/62‑1 (MQ=255) cGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGt < 1:3380243/62‑1 (MQ=255) cGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAg > 1:2738337/1‑69 (MQ=255) gTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTagag < 1:919456/43‑1 (MQ=255) gTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTagag < 1:3692417/43‑1 (MQ=255) gTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTagag < 1:3347985/43‑1 (MQ=255) gTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTagag < 1:1802664/43‑1 (MQ=255) gTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAgg > 1:329697/1‑69 (MQ=255) ttgtacgcgtccaAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGa > 1:2310787‑M1/14‑68 (MQ=255) ttgtacgcgtccaAAAAAA‑CGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGa > 1:2912993‑M1/14‑68 (MQ=255) tCACTCCATCCAAAAAAACGGGTATTGAGAAACAGTAGAGAGTTGCGa > 1:1683090/1‑48 (MQ=255) tCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGAt > 1:3111681/1‑68 (MQ=255) ccatccaAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTa > 1:95757/1‑69 (MQ=255) tccaAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAAt > 1:1047253‑M1/5‑69 (MQ=255) ccaAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCt < 1:3378638/69‑1 (MQ=255) caAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGt > 1:1331432‑M1/3‑54 (MQ=255) caAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCt > 1:212801‑M1/3‑69 (MQ=255) caAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCt > 1:2725816‑M1/3‑69 (MQ=255) caAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCtt > 1:3027579/1‑69 (MQ=255) caAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCtt > 1:1934487/1‑69 (MQ=255) caAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCtt < 1:2285051/69‑1 (MQ=255) caAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCtt > 1:2734211/1‑69 (MQ=255) caAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCtt > 1:3525069/1‑69 (MQ=255) caAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCtt > 1:2388086/1‑69 (MQ=255) caAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCt > 1:3316736/1‑68 (MQ=255) caAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCt > 1:3465945/1‑68 (MQ=255) aaaaaaaCGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTa > 1:3711193/1‑69 (MQ=255) | CCAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTA > W3110S.gb/69997‑70132 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |