| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 274373 | NA (NA) | 34 (0.920) | 15/100 | NT | 100% | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter |
| ? | W3110S.gb | 576000 = | 0 (0.000) | pseudogene (109/1128 nt) | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin | |||||
ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCC > W3110S.gb/274307‑274439 | atgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCgg > 1:1203784/1‑69 (MQ=33)atgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCgg > 1:228156/1‑69 (MQ=33)atgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCgg > 1:1997176/1‑69 (MQ=33) aTGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCt > 1:598842/1‑69 (MQ=255) tGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTg > 1:2432394/1‑69 (MQ=255) gCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAg < 1:2248834/54‑1 (MQ=38) tGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGt < 1:2856352/50‑1 (MQ=255) tGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGt < 1:1133179/50‑1 (MQ=255) tGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGt < 1:2189562/50‑1 (MQ=255) tGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGt < 1:288439/50‑1 (MQ=255) tGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGt < 1:2081278/50‑1 (MQ=255) tGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGt < 1:3283310/50‑1 (MQ=255) gACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCtttt < 1:3713699/69‑1 (MQ=255) cAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTgg > 1:199039/1‑57 (MQ=255) cAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTgg > 1:1603871/1‑57 (MQ=255) cAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTgg > 1:2128966/1‑57 (MQ=255) cAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTgg > 1:3660792/1‑57 (MQ=255) cAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTgg > 1:1461214/1‑57 (MQ=255) cAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTgg > 1:142062/1‑57 (MQ=255) cAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTgg > 1:3152987/1‑57 (MQ=255) cAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTgg > 1:3225461/1‑57 (MQ=255) aaaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGt < 1:2134843/69‑1 (MQ=255) aaaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGt < 1:120548/69‑1 (MQ=255) aaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCg < 1:1511261/38‑1 (MQ=33) aaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTa < 1:1188294/69‑1 (MQ=255) acgtGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGTCCCTTTTTGt < 1:3712035/64‑1 (MQ=255) cATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCttttt < 1:2573463/64‑1 (MQ=255) cATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCttttt < 1:384595/64‑1 (MQ=255) cATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCttttt < 1:1458290/64‑1 (MQ=255) aTCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGat < 1:2632995/69‑1 (MQ=255) aTCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGat < 1:1479422/69‑1 (MQ=255) aTCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGat < 1:994823/69‑1 (MQ=255) atCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGattatt < 1:3477278/66‑1 (MQ=255) tCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATc > 1:3259474/1‑69 (MQ=255) cGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTa > 1:3101462/1‑67 (MQ=255) tCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATcc < 1:3156935/50‑1 (MQ=255) tCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATcc < 1:2958230/50‑1 (MQ=255) tCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGcc > 1:263534/1‑69 (MQ=255) | ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCC > W3110S.gb/274307‑274439 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |