| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2412225 | NA (NA) | 34 (0.920) | 18/100 | NT | 85.0% | intergenic (‑55/‑782) | insA/yfbQ | IS1 element protein/predicted aminotransferase |
| ? | W3110S.gb | = 3748807 | 6 (0.160) | coding (176/984 nt) | tnaB | tryptophan transporter of low affinity | |||||
GAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCG > W3110S.gb/2412163‑2412293 | gAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaaaa < 1:2893210/69‑1 (MQ=40)gAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaaaa < 1:3366923/69‑1 (MQ=40) aaGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaaaa < 1:3530487/68‑1 (MQ=40) aGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc < 1:181930/69‑1 (MQ=255) cACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCg > 1:2698825/1‑67 (MQ=255) cACTGGAGCACCTCAAAAACACAATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCg > 1:131803/1‑67 (MQ=255) cTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTc < 1:1931571/69‑1 (MQ=255) gAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTcaca > 1:1770153/1‑69 (MQ=255) aCCTCAAAAACACCATCATACACTAAATCAGTAAGTTGTCAGCATCACCAAAAAAGCGACTCACATTGt < 1:3417876/69‑1 (MQ=255) ccTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGtt > 1:1106954/1‑69 (MQ=255) ccTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGtt > 1:3380460/1‑69 (MQ=255) ccTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGtt > 1:1143236/1‑69 (MQ=255) ccTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGt < 1:3664542/68‑1 (MQ=255) tCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTca > 1:3421803/1‑60 (MQ=255) tCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGAATCACCAAAAAAGCCACTca < 1:241741/60‑1 (MQ=17) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc < 1:2341014/53‑1 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc < 1:2187840/53‑1 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTcc > 1:1346322/1‑68 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTcc > 1:2772084/1‑68 (MQ=255) aaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGtt > 1:2956362/1‑68 (MQ=255) aaaCAACATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGtt > 1:2048828/1‑68 (MQ=255) aaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCCCCAAAAAAGCGACTCACATTGTTCCGTtat < 1:1423422/69‑1 (MQ=255) aaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTtat < 1:2858871/69‑1 (MQ=255) aaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTtat < 1:1210172/69‑1 (MQ=255) aaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTtat < 1:2716662/69‑1 (MQ=255) aaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTtat < 1:519433/69‑1 (MQ=255) aaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTtat < 1:529042/69‑1 (MQ=255) aaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTtat < 1:3506508/69‑1 (MQ=255) acCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAAt < 1:3702536/69‑1 (MQ=255) ccATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATg > 1:2638265/1‑69 (MQ=255) catcatACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGc < 1:2015190/69‑1 (MQ=255) catcatACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGc < 1:849254/69‑1 (MQ=255) catACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTg < 1:2127383/52‑1 (MQ=255) catACACTAAATCAGTAAGTTGGCAGCATCACAAAAAAAGCGACTCACATTg < 1:1242274/52‑1 (MQ=255) atACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGTCTCACATTGTTCCGTtat < 1:386363/60‑1 (MQ=255) atACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTtat < 1:3302467/60‑1 (MQ=255) atACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTtat < 1:3451038/60‑1 (MQ=255) atACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTtat < 1:3553256/60‑1 (MQ=255) atACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTtat < 1:826432/60‑1 (MQ=255) atACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTtat < 1:2002460/60‑1 (MQ=255) atACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTtat < 1:860162/60‑1 (MQ=255) cTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc < 1:3522127/35‑1 (MQ=255) cTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc < 1:485441/35‑1 (MQ=255) cTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc < 1:2219381/35‑1 (MQ=255) tAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCg < 1:1824263/35‑1 (MQ=255) tAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCg < 1:2012762/35‑1 (MQ=255) aaaTCAGTAATTTGGCAGCATCACCAAAAAAGCGACTCACATAGTTCAGtt > 1:1330900/1‑51 (MQ=25) aaaTCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGAt > 1:3020467/1‑69 (MQ=255) aaaTCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGAt > 1:3378909/1‑69 (MQ=255) tCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGt < 1:3348588/42‑1 (MQ=255) aGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAg < 1:3151289/69‑1 (MQ=255) ttGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAatat < 1:682424/68‑1 (MQ=255) ttGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAatat < 1:88661/68‑1 (MQ=255) ttGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAatat < 1:211877/68‑1 (MQ=255) tgggCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAatat < 1:1913564/66‑1 (MQ=255) ggCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGt > 1:3422443/1‑52 (MQ=255) ggCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGt > 1:2030367/1‑52 (MQ=255) cagcaTCACCAAAAAAGCGACTCACATTGTTCCGTtat > 1:650109/1‑38 (MQ=255) cagcaTCACCAAAAAAGCGACTCACATTGTTCCGTtat > 1:3349055/1‑38 (MQ=255) cagcaTCACCAAAAAAGCGACTCACATTGTTCCGTtat < 1:728770/38‑1 (MQ=255) agcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCtt < 1:532248/68‑1 (MQ=255) agcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCtt < 1:988631/68‑1 (MQ=255) agcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCtt < 1:3674868/68‑1 (MQ=255) agcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCtt < 1:2338456/68‑1 (MQ=255) aTCACCAAAAAAGCGACTCACATTGTTCCGTTATAAt > 1:3508546/1‑37 (MQ=255) aTCACCAAAAAAGCGACTCACATTGTTCCGTTATAAt > 1:3425099/1‑37 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGc < 1:458067/36‑1 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAg < 1:2552381/45‑1 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAatat < 1:3142345/57‑1 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGa < 1:3522356/68‑1 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGa < 1:101877/68‑1 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGAt > 1:116483/1‑69 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGAt > 1:3597278/1‑69 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGAt > 1:124466/1‑69 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGAt > 1:2313009/1‑69 (MQ=255) cAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCg < 1:2716356/69‑1 (MQ=255) cAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCg < 1:2681987/69‑1 (MQ=255) | GAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCG > W3110S.gb/2412163‑2412293 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |